Hi John, exactly this is the case. Playing around i see that id should index (vmd style). Yes I know that using id is actually a very bad but for this case i needed to use it.
for now thanks andrea Andrea Spitaleri PhD Dulbecco Telethon Institute c/o DIBIT Scientific Institute Biomolecular NMR, 1B4 Via Olgettina 58 20132 Milano (Italy) ----- Original Message ----- From: John Kuszewski <[email protected]> Date: Wednesday, November 22, 2006 9:43 pm Subject: Re: [Xplor-nih] select a part of a molecule in the tbl file > Hi, > > Using selections based on atom IDs is almost always a bad idea, > since > the IDs depend > on how the PSF was created. > > In this case, it appears that there's a problem with the xplor to > VMD > selection translation. > If you switch your selections to atom names or something, you > should > be fine. > > --JK > > On Nov 22, 2006, at 2:45 PM, <[email protected]> wrote: > > > Hi all, > > I have a tbl (cns-format) like this: > > > > assign ( resid 12 and segid A) > > ( > > ( resid 1 and segid B and (id 1114:1146)) > > ) 2.0 2.0 0.0 > > and feeding it to vmd-xplor it seems not reading it properly, but > just> skipping the restraints. if I remove the id 1114:1146 it > works as > > normal. I am sure that 1114:1146 it is a part of my molecule. > > probably i > > guess it is a syntax problem .... how can i solve it? > > > > thanks in advance > > > > Regards > > > > andrea > > > > Andrea Spitaleri PhD > > Dulbecco Telethon Institute > > c/o DIBIT Scientific Institute > > Biomolecular NMR, 1B4 > > Via Olgettina 58 > > 20132 Milano (Italy) > > > > ----- Original Message ----- > > From: [email protected] > > Date: Wednesday, November 22, 2006 8:22 pm > > Subject: Re: [Xplor-nih] problems with installation > > > >> -----BEGIN PGP SIGNED MESSAGE----- > >> Hash: SHA1 > >> > >> > >> Hello Jakob-- > >> > >>> > >>> I am trying to instal xplor-nih on redhat linux. When I am > >> running the > >>> configure script I get the folowwing error message: > >>> > >>> ./configure: line 45: xplor: command not found > >>> > >>> line 45 of "configure" says: > >>> > >>> "eval `bin/xplor -sh-env`" > >>> > >>> does this mean that I need to install xplor before installing > >> xplor-nih? > >>> > >> > >> No. > >> > >> I think you have not downloaded and unpacked the two tar.gz > files. > >> One > >> - -db.tar.gz and the other one of the -Linux*.tar.gz files. Please > >> makesure you have both unpacked and see if the error persists. > >> > >> regards-- > >> Charles > >> -----BEGIN PGP SIGNATURE----- > >> Version: GnuPG v1.4.5 (GNU/Linux) > >> Comment: Processed by Mailcrypt 3.5.8 <" > >> target="l">" target="l">http://mailcrypt.sourceforge.net/> > >> iD8DBQFFZKNhPK2zrJwS/lYRArUVAJ99TYyGuspGy3x9YgveYLSo2jEzQACfZA1H > >> tt6=DmnT > >> -----END PGP SIGNATURE----- > >> _______________________________________________ > >> Xplor-nih mailing list > >> [email protected] > >> http://dcb.cit.nih.gov/mailman/listinfo/xplor-nih > >> > >> <spitaleri.andrea.vcf> > > _______________________________________________ > > Xplor-nih mailing list > > [email protected] > > http://dcb.cit.nih.gov/mailman/listinfo/xplor-nih > -------------- next part -------------- A non-text attachment was scrubbed... Name: spitaleri.andrea.vcf Type: text/x-vcard Size: 241 bytes Desc: Card for <[email protected]> Url : http://cake.cit.nih.gov/pipermail/xplor-nih/attachments/20061122/17ff83aa/spitaleri.andrea.vcf
