Hi,
I am trying to build a pdb file of a molecule with a ligand attached. I
have made the relevant topology file but can not seem to get past the
hbuild section. I receive the below error. My ligand is named MSC. Has
anyone else received this error or know what it might pertain to / how to
cure the issue?
HBUILD: HB2 ,HB3 , placed for donor 410 ASN CB .
HBUILD: H , , placed for donor 411 MSC N .
%HBUILD-ERR: Geometry unknown for donor 411 MSC CA
%<HBUILD>-ERR: Unknown geometry for hydrogen donor.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
BOMLEV= 0 reached. Program execution will be terminated.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Subroutine DIE called . Terminating
Bryn
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R. Bryn Fenwick Department of Biochemistry,
[email protected] University of Cambridge,
[email protected] 80 Tennis Court Road,
Tel: +44 1223 766018 Old Addenbrookes Site,
Fax: +44 1223 766002 Cambridge, CB2 1GA, UK.
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