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Hello Tiandi--

>       Thank you for your response. I add those three lines before the
>       high temperature dynamics but the structures generated are still
>       the same. Do you have any suggestions?  
>       Do you have some example scripts that dels with the similar
>       problems to share with? 

right- working from an example is the best idea. Please try
eginput/gb1_rdc/refine.py
You can add in the pcs term using the lines:

xplor.command("""
xpcs
 nres=2000
 class EU
 force 50.0
 coeff 178.84 44.1
 @pcshifts.tbl
end
""")
potList.append(XplorPot('XPCS'))

best regards--
Charles
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