> Hello Gary-- > >> > I am using the Fit and RMSD objects to fit structures to a starting >> > structure as shown in the example python/tests/fitTest.py . However, it >> > seems to be incredibly slow (it takes minutes to fit 50 structures with >> > CA overlay and 150 residues...) is this expected > > That is not expected. Something's wrong- I suspect an I/O issue. Which > platform are you running on? Is you send your script I should be able to > help. > > regards-- > Charles
Hi Charles IO speed could be the problem here as we do have known IO speed problems its just that i wasn't aware that they were that bad, I will have to investigate further regards gary -- ------------------------------------------------------------------- Dr Gary Thompson Astbury Centre for Structural Molecular Biology, University of Leeds, Astbury Building, Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024 email: garyt at bmb.leeds.ac.uk Fax +44-113-2331407 -------------------------------------------------------------------
