I have added hydroxyproline parameters to the protein.par and protein.top. When I run the generate script (to get an ideal geometry pdb from the psf) I get the error
%CODBON-ERR: missing bond parameters %%%%%%%%%%%%%%%%%%%%%%%%%% bond energy constant missing. target bond length missing. ATOM1: SEGId=" ", RESId="12 ", NAME="CG ", CHEMical="CP " ATOM2: SEGId=" ", RESId="12 ", NAME="OD1 ", CHEMical="OH " %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %CODBON-ERR: program will be aborted. This error is only in xplor-nih. When I run it on xplor 3.8 it works. What file or parameter do I need to adjust to fix this error in xplor-nih?
