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Hello Brendan--

> 
> I have been having trouble producing reasonable structures of an RNA
> stem-loop.  The nucleic acid examples do not start from random
> structures, as I need to do, and modifying the protein example protocols
> has not been successful.  Does anyone have a protocol and a set of
> restraints that they would be willing to share so that I can test my
> installation?
> 

A hybrid of the scripts in eginput/gb1_rdc and eginput/dna_refi should
do what you want. Please give a shot at putting something together, and
then I can probably to help you from there.

best regards--
Charles
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