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Hello Pooja-- > > I am running simulated annealing to refine a protein structure. I am > generating 40 conformations. However, in some of the runs, few of > these conformation files are empty, that is no coordinates are > written. When I checked the output file, the failure in renaming the > files appears. Following snippet of the output shows the error. > (rename: failed to rename gen_xxxx_hssp.pdb;2 to gen_xxxx_hssp.pdb; > 1.). What might be causing this renaming error ? Any advice as how to > solve it. which computer platform are you running on? Which verision of Xplor-NIH? Is this being run on a cluster? If so, it's possible that some of the nodes are losing contact with the fileserver. best regards-- Charles -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.9 (GNU/Linux) Comment: Processed by Mailcrypt 3.5.8+ <http://mailcrypt.sourceforge.net/> iD8DBQFIosrJPK2zrJwS/lYRAoNMAJ9H4uxZZcYXJuPMsiFLVIRQ3l7QCwCggXo7 ie5+GG2uTBZtJIjw3j7eNNs= =vJiu -----END PGP SIGNATURE-----
