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Hello Pavel--
> I am facing the xplor instability during the PASD procedure. The
> structure generating steps (sa_pass2.tcl, sa_pass3.tcl) are killed
> before the full number of structures is generated.
>
> the last message in the file is:
> /usr/local/chem/xplor-nih-2.24/bin/xplor: line 471: 1308
> Killed /usr/local/chem/xplor-nih-2.24/bin.Linux_2.6_x86_64/x
> plor '-tcl' 'sa_pass2.tcl'
>
My first thought was limits, but
>
> there should not be the problem with limits. ulimit -a output:
you covered that. It looks like you're not getting core files, even
though
> on client:
> core file size (blocks, -c) unlimited
Are there any syslog messages when the process is killed? Please make
certain of the limits Xplor-NIH sees by running the following Python
scriptlet within Xplor-NIH on the server and clients.
thanks--
Charles
xplor -quiet -notrace -py <<EOF
import resource
for name, desc in [
('RLIMIT_CORE', 'core file size'),
('RLIMIT_CPU', 'CPU time'),
('RLIMIT_FSIZE', 'file size'),
('RLIMIT_DATA', 'heap size'),
('RLIMIT_STACK', 'stack size'),
('RLIMIT_RSS', 'resident set size'),
('RLIMIT_NPROC', 'number of processes'),
('RLIMIT_NOFILE', 'number of open files'),
('RLIMIT_MEMLOCK', 'lockable memory address'),
]:
limit_num = getattr(resource, name)
soft, hard = resource.getrlimit(limit_num)
print 'Maximum %-25s (%-15s) : %20s %20s' % (desc, name, soft, hard)
EOF
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