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Hello Gary--
> I was trying to change segments names in the python interface to match a
> generated psf file
>
> psfGen.seqToPSF('YYYY.seq',seqType='prot',startResid=1, segName='XXXX')
>
> from pdbTool import PDBTool
> PDBTool('YYYY.pdb').read()
>
> sel = AtomSel("all")
> sel.apply( SetProperty("segmentName","XXXX"))
>
> however, when I check for unknown atoms all the atoms are unknown....
>
> sel = AtomSel("not known")
> for atom in sel:
> ??print atom.string()
Are atoms known before the sel.apply( SetProperty("segmentName","XXXX"))
line? does PDBTool.read return any errors/warnings?
>
> is this a problem where I need to?synchronise? pyXplor to the xplor instance
> or vice versa (and if so how) or am I missing something
>
You shouldn't have to do anything special here.
best regards--
Charles
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