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Hello Chunyu--
>
> I ran into two problems while testing the anneal.py script in =
> eginput/protG:
>
> 1. I had trouble generating extended structure and got these message:
> anneal.py(42): protocol.genExtendedStructure("gb1_extended_%d.pdb" % =
> seed)
> /Applications/darwin/xplor-nih-2.24/bin/xplor: line 469: 20033 =
> Segmentation fault =
> /Applications/darwin/xplor-nih-2.24/bin.Darwin_8_x86/xplor '-py' =
> 'anneal.py'
>
> 2. If instead, I loaded a pdb, e.g. template_protG.pdb, then ran into =
> this problem:
> anneal.chunyu.py(172): varTensorTools.topologySetup(dyn,oTensor)
> terminate called after throwing an instance of 'PyConvert_TypeError'
> /Applications/darwin/xplor-nih-2.24/bin/xplor: line 469: 20180 Abort =
> trap =
> /Applications/darwin/xplor-nih-2.24/bin.Darwin_8_x86/xplor '-py' =
> 'anneal.chunyu.py'
>
> I am using a MacBook Pro, OS X version 10.6.2.
>
I have not yet tested 10.6. You might find a traceback in
~/Library/Logs/CrashReporter/xplor.crash.log
If so, please send it to me.
There are some extra (system) libraries in the bin.Darwin_8_x86 of the
Xplor-NIH distribution- a possibility is that one of them is causing
this problem, so the problem could be fixed by deleting one or more lib*
files from that directory.
best regards--
Charles
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