Hi Elio, The FormatConverter (FC) written by Wim Vranken does these things well. For doing them once you can use the web server here<http://webapps.ccpn.ac.uk/fcweb>. A while ago I pushed out a tutorial for using it here<http://www.youtube.com/watch?v=oQDzprTLtx8> .
If you want to include this in an automatic setup then you want to python script around the api like we did. The FC linked and unparsed to Xplor-NIH .tbl files for all 5,000+ NMR structures in PDB with experimental data here<http://restraintsgrid.bmrb.wisc.edu> . If you have any questions feel free to contact me. Cheers, Jurgen [image: ?ui=2&view=att&th=126fa1ae527d3160&attid=0.1&disp=attd&realattid=ii_126fa1ae527d3160&zw] Jurgen F. Doreleijers Centre for Molecular & Biomolecular Informatics, NCMLS & Protein Biophysics, Institute for Molecules & Materials Radboud University of Nijmegen Visitors: NCMLS Research building, room 0.25, Geert-Grooteplein 26-28, 6525 GA Nijmegen, The Netherlands Mail: Protein Biophysics 260, PO Box 9101, 6500 HB Nijmegen, The Netherlands Tel: +31 24 3619674 On Tue, Mar 9, 2010 at 7:06 PM, <Charles at schwieters.org> wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > > Hello Elio-- > > > Hi Charles. I was just wondering if you know of a place to get > > scripts/codes to generate the different tbl restraint files for xplor? > > I checked around, but didnt find any. Im just wondering because it > > will take some time to write scripts to produce these tbl files for my > > rdc, noe, talos+, etc data...a simple, but time consuming task that I > > am sure many people have done already. > > > > A good question. Embarrassingly, I am not a good source for such > scripts. > > I would be pleased to act as a repository if the community wishes to > contribute such scripts. Alternatively, if there are very common formats > of precursor tables (produced by other software), I could arrange > Xplor-NIH to have facilities to directly read these files. For this, I > would need example files and a description of the contents. > > best regards-- > Charles > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.10 (GNU/Linux) > Comment: Processed by Mailcrypt 3.5.8+ <http://mailcrypt.sourceforge.net/> > > iEYEARECAAYFAkuWjjcACgkQPK2zrJwS/laEkQCdFp8GL2iJB92IlcvrcomxThiY > vsgAn2bsm5M2nXefCdd3AHNpdlJNIT2S > =SS59 > -----END PGP SIGNATURE----- > _______________________________________________ > Xplor-nih mailing list > Xplor-nih at nmr.cit.nih.gov > http://dcb.cit.nih.gov/mailman/listinfo/xplor-nih > -- Jurgen F. Doreleijers Centre for Molecular & Biomolecular Informatics, NCMLS & Protein Biophysics, Institute for Molecules & Materials Radboud University of Nijmegen Visitors: NCMLS Research building, room 0.25, Geert-Grooteplein 26-28, 6525 GA Nijmegen, The Netherlands Mail: Protein Biophysics 260, PO Box 9101, 6500 HB Nijmegen, The Netherlands Tel: +31 24 3619674 -------------- next part -------------- An HTML attachment was scrubbed... URL: http://dcb.cit.nih.gov/pipermail/xplor-nih/attachments/20100309/71e0e622/attachment.html -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/png Size: 5894 bytes Desc: not available Url : http://dcb.cit.nih.gov/pipermail/xplor-nih/attachments/20100309/71e0e622/attachment.png
