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Hello Vitaly--
> Thank you for the fast response, the solution you propose suits me
> very well. There is still an issue with a psfGen though: when seqToPSF
> is supplied with ctermPatch='', the error message results:
>
> Traceback (most recent call last):
> File "stdin", line 1, in <module>
> File "/opt/xplor-nih-2.24/python/psfGen.py", line 553, in seqToPSF
> ''' % (nterm,cterm,splitSeq))
> UnboundLocalError: local variable 'cterm' referenced before assignment
>
Sorry to post such an untested solution. The patch below should fix the
problem (I also updated the web site-posted version).
best regards--
Charles
*** python/psfGen.py 2011-01-11 15:54:24 +0000
- --- python/psfGen.py 2011-01-11 17:56:37 +0000
***************
*** 510,515 ****
- --- 510,517 ----
pass
if ctermPatch:
cterm = "LAST %s HEAD - * END" % ctermPatch
+ else:
+ cterm=''
pass
if seq[0]=='ACE':
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