Hi,
I'd like to use pdb2psf to generate a psf file for a protein with
nonconsecutive numbering, but currently psfgen breaks the chain where the
residue numbers are not consecutive:
if seq:
if (seg!=curSeg or
resid!=curResid and resid!=curResid+1):
#print "seq change termination >%s< >%s<" % ( seg,
curSeg)
terminate=1
lostRes=res
If I comment out the terminate then the numbering continues from the start
residue.
The protein is a synthetic fusion of two domains and I'd like to use the
Uniprot numbering for submission. Can you suggest an alteration to psfGen.py
that will number the peptide in the psf as in the pdb file?
Thanks,
Ben
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