Hello Daniel--
> Hello, I'm attempting to run the script targetRMSD on my ensemble. ?I have
> had success looking at a specific seqgment, such as resid 10:20 however I
> ultimately want to use this script to look at the strands of my beta-barrel
> and as such would need to combine 8 different segments, i.e resid 10:20 AND
> resid 50:60 etc, however I cannot find a way for the script to recognize
> multiple segments. ?
Keith nailed it: your selection should be something like
resid 10:20 or resid 50:60
so the command would be something like
> % targetRMSD -seletion "resid 10:17 and name CA" avg.pdb struc*.pdb
>
targetRMSD -selection "(resid 10:17 or resid 50:60) and name CA" avg.pdb
struc*.pdb
best regards--
Charles
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--
Charles Schwieters email: Charles at Schwieters.org
www: http://schwieters.org/cds
phone: (301) 402-4914 PGP key: http://schwieters.org/cds/pgp.txt
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