Hello Marie-Laurence--
> I get this message at the start of my structure calculations:?
>
> round10_new.py(278): ? ? randomizeTorsions(dyn)
> AT_Build::buildNode: cycle link found between atoms 28 PRO 3 CD and 19 PRO 3
> N
> removing bond.
This is symptomatic of not calling
protocol.torsionTopology(dyn)
earlier in your script. If you posted your script I coudl tell for
certain.
best regards--
Charles
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Charles Schwieters email: Charles at Schwieters.org
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