Hi Tom--

> 
> How much of an old style .inp file can be placed between the
> xplor.command() in .py scripts?  Does each .inp command need a
> separate () or does the script just keep reading until the end of the
> parentheses?

An example in eginput/PSF_generation/genModCircPep.py shows that you
can place arbitrarily many XPLOR commands into the string argumeng of
xplor.command() 


>    We
> are trying to place an Fe(II) ion ligated by His and Glu, with some
> added water ligands for the metal.
> 

Please let me know if you need further guidance.

Charles

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