Hi, Charles,

So I have generated two separate PSFs and PDBs using python scripts with appropriate atom deletions (for the protein, where the metal will bind) and for the metal ion, but i cannot figure out how to unite the two into a single structure.  I guess the problem is two-fold, first specifying that the metal is part of the protein structure, but also specifying to which atoms in the protein the metal is bound, but also specifying bond lengths/angles/dihedrals that I used to do explicitly as part of the xplor script in the old days.

Thanks,

Tom Pochapsky

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