Messages by Date
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2011/03/03
Re: [Xplor-nih] psfgen nonconsecutive numbering
Charles
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2011/03/03
[Xplor-nih] psfgen nonconsecutive numbering
Benjamin Leach
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2011/02/14
Re: [Xplor-nih] testDist
Greef, T.F.A. de
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2011/02/14
Re: [Xplor-nih] testDist
Charles
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2011/02/14
[Xplor-nih] testDist
Greef, T.F.A. de
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2011/02/08
Re: [Xplor-nih] how to generate Zinc patch
Charles
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2011/02/08
[Xplor-nih] how to generate Zinc patch
Lei Zeng
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2011/02/08
Re: [Xplor-nih] xplor-nih
Charles
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2011/01/27
Re: [Xplor-nih] stopping python pbs jobs
Charles
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2011/01/27
Re: [Xplor-nih] about dani in xplor-nih
Charles
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2011/01/26
[Xplor-nih] about dani in xplor-nih
zhangliqun
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2011/01/26
Re: [Xplor-nih] i5 core parallel ?
Charles
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2011/01/26
[Xplor-nih] i5 core parallel ?
Matthew D Shortridge
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2011/01/25
Re: [Xplor-nih] stopping python pbs jobs
David A. Horita
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2011/01/25
Re: [Xplor-nih] stopping python pbs jobs
Charles
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2011/01/25
[Xplor-nih] stopping python pbs jobs
David A. Horita
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2011/01/20
Re: [Xplor-nih] problems of numbering residue/tensors with RDC
Charles
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2011/01/20
Re: [Xplor-nih] problems of numbering residue/tensors with RDC
helene.demene
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2011/01/18
Re: [Xplor-nih] problems of numbering residue/tensors with RDC
Charles
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2011/01/17
[Xplor-nih] problems of numbering residue/tensors with RDC
helene.demene
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2011/01/14
Re: [Xplor-nih] noe ceiling
Charles
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2011/01/14
[Xplor-nih] noe ceiling
David A. Horita
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2011/01/11
Re: [Xplor-nih] Custom C-terminal residue
Vitaly Vostrikov
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2011/01/11
Re: [Xplor-nih] Custom C-terminal residue
Charles
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2011/01/11
Re: [Xplor-nih] Custom C-terminal residue
Vitaly Vostrikov
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2011/01/11
Re: [Xplor-nih] Custom C-terminal residue
Charles
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2011/01/10
[Xplor-nih] Custom C-terminal residue
Vitaly Vostrikov
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2011/01/07
Re: [Xplor-nih] Individual Distance restraint weightings in dist geometry and anneal ?
Charles
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2011/01/07
Re: [Xplor-nih] Individual Distance restraint weightings in dist geometry and anneal ?
Debora Marks
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2010/12/28
Re: [Xplor-nih] h3jnc
Charles
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2010/12/28
[Xplor-nih] h3jnc
Juranic, Nenad O., Ph.D.
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2010/12/21
Re: [Xplor-nih] (no subject)
Charles
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2010/12/21
Re: [Xplor-nih] (no subject)
Daniel Schaal
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2010/12/21
Re: [Xplor-nih] (no subject)
David A. Horita
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2010/12/21
Re: [Xplor-nih] (no subject)
Daniel Schaal
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2010/12/21
Re: [Xplor-nih] (no subject)
Daniel Schaal
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2010/12/20
Re: [Xplor-nih] Xplor-nih Digest, Vol 94, Issue 4
Charles
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2010/12/20
Re: [Xplor-nih] Xplor-nih Digest, Vol 94, Issue 4
Kathryn Sarachan
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2010/12/20
Re: [Xplor-nih] (no subject)
Charles
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2010/12/20
[Xplor-nih] (no subject)
Daniel Schaal
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2010/12/13
Re: [Xplor-nih] Individual Distance restraint weightings in dist geometry and anneal ?
Charles
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2010/12/13
[Xplor-nih] Individual Distance restraint weightings in dist geometry and anneal ?
Debora Marks
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2010/12/10
Re: [Xplor-nih] (no subject)
Charles
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2010/12/10
[Xplor-nih] (no subject)
helene.demene
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2010/12/09
[Xplor-nih] (no subject)
Michael Hodsdon
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2010/11/29
Re: [Xplor-nih] how to generate .pdb file from .psf structure file (initial embedding)
Charles
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2010/11/29
[Xplor-nih] how to generate .pdb file from .psf structure file (initial embedding)
Anna Kuznetsova
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2010/11/23
Re: [Xplor-nih] Fitting to SAXS/WAXS/SANS data
Charles
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2010/11/23
[Xplor-nih] Fitting to SAXS/WAXS/SANS data
Paul Driscoll
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2010/11/22
Re: [Xplor-nih] question about refinement
Song, Hyundeok (songhk)
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2010/11/16
Re: [Xplor-nih] XPLOR maximum RDC setting
Charles
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2010/11/16
Re: [Xplor-nih] XPLOR maximum RDC setting
Mueller, Geoffrey (NIH/NIEHS) [E]
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2010/11/15
Re: [Xplor-nih] XPLOR maximum RDC setting
Joshua Ward
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2010/11/15
Re: [Xplor-nih] XPLOR maximum RDC setting
Mueller, Geoffrey (NIH/NIEHS) [E]
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2010/11/15
Re: [Xplor-nih] XPLOR maximum RDC setting
Charles
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2010/11/15
[Xplor-nih] XPLOR maximum RDC setting
Joshua Ward
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2010/11/12
Re: [Xplor-nih] question about refinement
Charles
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2010/11/11
Re: [Xplor-nih] question about refinement
Song, Hyundeok (songhk)
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2010/11/10
Re: [Xplor-nih] xplor-nih question
Charles
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2010/11/08
Re: [Xplor-nih] A few questions of PASD Protocol for structure determination.
Charles
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2010/11/08
[Xplor-nih] A few questions of PASD Protocol for structure determination.
Si Yan
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2010/11/04
Re: [Xplor-nih] Fwd: One question about adding NOE constraints
Charles
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2010/10/29
Re: [Xplor-nih] Energy minimization for oligomers
Charles
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2010/10/29
Re: [Xplor-nih] Energy minimization for oligomers
Yi Zhang
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2010/10/28
Re: [Xplor-nih] question about refinement
Charles
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2010/10/28
[Xplor-nih] question about refinement
Song, Hyundeok (songhk)
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2010/10/28
Re: [Xplor-nih] Energy minimization for oligomers
Charles
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2010/10/27
[Xplor-nih] Energy minimization for oligomers
Yi Zhang
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2010/10/26
Re: [Xplor-nih] Can't install Xplor-nih on Darwin_8_x86_64
Charles
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2010/10/26
[Xplor-nih] Can't install Xplor-nih on Darwin_8_x86_64
Juergen Arve
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2010/10/25
Re: [Xplor-nih] About dgsa and how to include CSA in calculation.
Charles
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2010/10/25
[Xplor-nih] About dgsa and how to include CSA in calculation.
Si Yan
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2010/10/25
Re: [Xplor-nih] energy minimization of side chains
Charles
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2010/10/22
[Xplor-nih] energy minimization of side chains
Yi Zhang
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2010/10/19
Re: [Xplor-nih] To compute the RMSD of the calculated structure and x-ray structure
Charles
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2010/10/19
[Xplor-nih] To compute the RMSD of the calculated structure and x-ray structure
Si Yan
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2010/10/18
Re: [Xplor-nih] RAMA inter-residue
Bermejo, Guillermo (NIH/CIT) [E]
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2010/10/18
[Xplor-nih] RAMA inter-residue
Jakob Toudahl Nielsen
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2010/10/18
Re: [Xplor-nih] dock_tor_rigid mods
Charles
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2010/10/15
[Xplor-nih] dock_tor_rigid mods
David A. Horita
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2010/10/13
Re: [Xplor-nih] Ensemble Calculation with MTSL label s
Charles
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2010/10/13
[Xplor-nih] Ensemble Calculation with MTSL label s
Yi Zhang
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2010/10/12
Re: [Xplor-nih] addAtoms.py
Mueller, Geoffrey (NIH/NIEHS) [E]
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2010/10/12
Re: [Xplor-nih] addAtoms.py
Charles
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2010/10/12
Re: [Xplor-nih] rigid body optimization of oligomer
Charles
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2010/10/11
[Xplor-nih] addAtoms.py
David A. Horita
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2010/10/11
[Xplor-nih] rigid body optimization of oligomer
Jakob Toudahl Nielsen
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2010/10/01
Re: [Xplor-nih] cis-peptide
Charles
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2010/10/01
[Xplor-nih] cis-peptide
psarkar
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2010/09/29
Re: [Xplor-nih] Shape term
Charles
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2010/09/28
Re: [Xplor-nih] Shape term
Robert Brynmor Fenwick
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2010/09/28
Re: [Xplor-nih] Shape term
Charles
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2010/09/28
[Xplor-nih] Shape term
Robert Brynmor Fenwick
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2010/09/27
Re: [Xplor-nih] Installing the latest version of vmd-Xplor for Mac
Charles
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2010/09/27
[Xplor-nih] Installing the latest version of vmd-Xplor for Mac
Anna Kuznetsova
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2010/09/23
Re: [Xplor-nih] Hydrogen name mismatch
Charles
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2010/09/22
Re: [Xplor-nih] Atom Order and Rigid Body Docking
Charles
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2010/09/22
[Xplor-nih] Atom Order and Rigid Body Docking
Andrew Butterworth
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2010/09/09
Re: [Xplor-nih] Calculation with 'newrefine.py'
Charles
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2010/09/08
Re: [Xplor-nih] Calculation with 'newrefine.py'
Charles
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2010/09/08
Re: [Xplor-nih] Calculation with 'newrefine.py'
Charles
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2010/09/08
[Xplor-nih] Calculation with 'newrefine.py'
Yi Zhang
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2010/09/03
Re: [Xplor-nih] Structure calculation with multiple MTSL side chains
Charles
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2010/09/03
[Xplor-nih] Structure calculation with multiple MTSL side chains
Yi Zhang
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2010/08/21
Re: [Xplor-nih] xplor-nih installation on Mac OS 10.6.4
Charles
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2010/08/20
[Xplor-nih] xplor-nih installation on Mac OS 10.6.4
Nathan Wright
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2010/08/13
Re: [Xplor-nih] PASD strucure generation killed
Charles
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2010/08/13
[Xplor-nih] PASD strucure generation killed
pavel macek
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2010/08/02
Re: [Xplor-nih] Fwd: changing segment names
Charles
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2010/07/30
[Xplor-nih] Fwd: changing segment names
gary thompson
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2010/07/29
Re: [Xplor-nih] Temperature and GB computing time increase
Charles
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2010/07/28
Re: [Xplor-nih] Temperature and GB computing time increase
Olivier Serve
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2010/07/28
[Xplor-nih] Temperature and GB computing time increase
Olivier Serve
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2010/07/26
Re: [Xplor-nih] simulated annealing with explicit electrostatics
Charles
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2010/07/26
Re: [Xplor-nih] simulated annealing with explicit electrostatics
Jack Skalicky
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2010/07/20
Re: [Xplor-nih] IVM hinges
Charles
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2010/07/19
Re: [Xplor-nih] Nucleic acid ensemble refinement
Charles
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2010/07/19
[Xplor-nih] IVM hinges
S.P. Skinner
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2010/07/16
[Xplor-nih] Nucleic acid ensemble refinement
DeRose, Eugene (NIH/NIEHS) [C]
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2010/07/06
Re: [Xplor-nih] PyPot base class
Charles
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2010/07/06
[Xplor-nih] PyPot base class
Jakob Toudahl Nielsen
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2010/06/29
Re: [Xplor-nih] FW: RDC
Charles
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2010/06/29
[Xplor-nih] FW: RDC
Hussan, Syed (NIH/NIDDK) [F]
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2010/06/29
Re: [Xplor-nih] Isopeptide patch
Charles
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2010/06/28
Re: [Xplor-nih] DNA ensemble calculation
Charles
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2010/06/26
Re: [Xplor-nih] Isopeptide patch
olivier serve
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2010/06/25
Re: [Xplor-nih] DNA ensemble calculation
DeRose, Eugene (NIH/NIEHS) [C]
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2010/06/25
Re: [Xplor-nih] DNA ensemble calculation
Charles
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2010/06/25
Re: [Xplor-nih] DNA ensemble calculation
DeRose, Eugene (NIH/NIEHS) [C]
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2010/06/24
Re: [Xplor-nih] "class" specification in "sani"
Charles
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2010/06/24
Re: [Xplor-nih] "class" specification in "sani"
Thomas Pochapsky
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2010/06/24
Re: [Xplor-nih] DNA ensemble calculation
Charles
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2010/06/24
Re: [Xplor-nih] "class" specification in "sani"
Charles
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2010/06/24
Re: [Xplor-nih] DNA ensemble calculation
DeRose, Eugene (NIH/NIEHS) [C]
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2010/06/24
[Xplor-nih] "class" specification in "sani"
Thomas Pochapsky
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2010/06/24
Re: [Xplor-nih] DNA ensemble calculation
Charles
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2010/06/24
Re: [Xplor-nih] Isopeptide patch
Charles
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2010/06/24
Re: [Xplor-nih] Latest Version ?
Charles
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2010/06/23
[Xplor-nih] DNA ensemble calculation
DeRose, Eugene (NIH/NIEHS) [C]
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2010/06/23
Re: [Xplor-nih] Isopeptide patch
olivier serve
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2010/06/23
[Xplor-nih] Latest Version ?
Jay Vyas
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2010/06/23
Re: [Xplor-nih] xplor-nih for Sun computers
Charles
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2010/06/23
Re: [Xplor-nih] Isopeptide patch
Charles
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2010/06/23
[Xplor-nih] xplor-nih for Sun computers
Christina Redfield
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2010/06/22
[Xplor-nih] Isopeptide patch
olivier serve
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2010/06/19
Re: [Xplor-nih] (no subject)
Charles
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2010/06/18
[Xplor-nih] (no subject)
Aleksandra Wiktorowicz
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2010/06/17
Re: [Xplor-nih] Problem with writing pdbs using Python annealing script
Charles
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2010/06/17
[Xplor-nih] Problem with writing pdbs using Python annealing script
David Yadin
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2010/06/10
Re: [Xplor-nih] simulated annealing with explicit electrostatics
Charles
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2010/06/10
[Xplor-nih] simulated annealing with explicit electrostatics
Thomas Pochapsky
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2010/06/04
Re: [Xplor-nih] Issue with GB potential
Charles
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2010/06/04
Re: [Xplor-nih] angles and bonds in nucleic.par
Charles
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2010/06/03
[Xplor-nih] Issue with GB potential
Olivier Serve
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2010/06/03
Re: [Xplor-nih] angles and bonds in nucleic.par
Maria Pechlaner
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2010/06/01
[Xplor-nih] About previous implicit solvent question
Olivier Serve
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2010/05/31
[Xplor-nih] Implicit solvent
Olivier Serve
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2010/05/25
Re: [Xplor-nih] Problem implementing DELPHIC DNA potential
Charles
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2010/05/24
[Xplor-nih] Problem implementing DELPHIC DNA potential
DeRose, Eugene (NIH/NIEHS) [C]
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2010/05/14
Re: [Xplor-nih] Need NMR refinement structure programme
Charles
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2010/05/13
[Xplor-nih] Need NMR refinement structure programme
anupam bandyopadhyay
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2010/05/12
Re: [Xplor-nih] angles and bonds in nucleic.par
Charles
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2010/05/12
[Xplor-nih] angles and bonds in nucleic.par
Maria Pechlaner
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2010/05/07
Re: [Xplor-nih] noe calc: unit?
andrea spitaleri
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2010/05/07
Re: [Xplor-nih] noe calc: unit?
Charles
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2010/05/07
Re: [Xplor-nih] noe calc: unit?
andrea spitaleri
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2010/04/29
Re: [Xplor-nih] "removing bond" message during refinement with Zn
Charles
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2010/04/29
[Xplor-nih] "removing bond" message during refinement with Zn
Mikaela Stewart
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2010/04/18
Re: [Xplor-nih] conjugate_2.pdb input file from PRE_DISTRIBUTE
Charles
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2010/04/15
[Xplor-nih] conjugate_2.pdb input file from PRE_DISTRIBUTE
Business
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2010/04/14
Re: [Xplor-nih] setPotType("soft") for noes
Charles
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2010/04/13
[Xplor-nih] setPotType("soft") for noes
David A. Horita
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2010/04/05
Re: [Xplor-nih] Refinement with Zn atoms
Charles
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2010/04/03
Re: [Xplor-nih] SAXS data
Charles
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2010/04/02
[Xplor-nih] Refinement with Zn atoms
Mikaela Stewart
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2010/03/25
Re: [Xplor-nih] refine.py dihedral angles input file
Charles
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2010/03/25
[Xplor-nih] refine.py dihedral angles input file
Mikaela Stewart
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2010/03/25
Re: [Xplor-nih] Period Box
Charles
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2010/03/24
[Xplor-nih] Period Box
Usman Rasul
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2010/03/16
Re: [Xplor-nih] Is there a script that converts Sparky .list assignment names to XPLOR format for RDCs?
Charles
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2010/03/15
[Xplor-nih] Is there a script that converts Sparky .list assignment names to XPLOR format for RDCs?
Mikaela Stewart
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2010/03/13
Re: [Xplor-nih] Calculating VDW energies for proteins with multiple mtsl probes
Charles
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2010/03/12
[Xplor-nih] Calculating VDW energies for proteins with multiple mtsl probes
Rob Clubb
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2010/03/09
Re: [Xplor-nih] input tbl files
Jurgen F. Doreleijers
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2010/03/09
Re: [Xplor-nih] input tbl files
Charles
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2010/03/09
Re: [Xplor-nih] xplor-nih-2.25 on cluster
Charles
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2010/03/09
[Xplor-nih] xplor-nih-2.25 on cluster
Muskett, Fred W. (Dr.)
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2010/03/02
Re: [Xplor-nih] Xplor-nih Digest, Vol 85, Issue 1
Charles
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2010/03/02
Re: [Xplor-nih] Xplor-nih Digest, Vol 85, Issue 1
Krish Krishnan
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2010/02/28
Re: [Xplor-nih] SAXS data
Charles
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2010/02/26
[Xplor-nih] SAXS data
Krish Krishnan
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2010/02/20
Re: [Xplor-nih] pdbLoad function
Charles
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2010/02/19
[Xplor-nih] pdbLoad function
Krish Krishnan
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2010/02/17
Re: [Xplor-nih] Problems writing structures; followup on http://www.mail-archive.com/[email protected]/msg00927.html
Charles
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2010/02/17
[Xplor-nih] Problems writing structures; followup on http://www.mail-archive.com/[email protected]/msg00927.html
R.M. van der Werf
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2010/02/17
Re: [Xplor-nih] Problems with eginput DNA structure calculations
Charles
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2010/02/17
Re: [Xplor-nih] cyclic peptide
Charles
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2010/02/17
Re: [Xplor-nih] cyclic peptide
wangtian780
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2010/02/16
Re: [Xplor-nih] Problems with eginput DNA structure calculations
DeRose, Eugene (NIH/NIEHS) [C]
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2010/02/16
Re: [Xplor-nih] cyclic peptide
wangtian780