Thanks Dr.Schwieters, just protocol.genExtendedStructure()
seems to be solving the problem. So, guess, it's an error due to some processes
attempting to write to the file simultaneously and thus failing and exiting.
[EMAIL PROTECTED] wrote: -----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hello Nah--
> The system architecture is : X86_64 (Linux 64bit). and have 'pasted' the
> script below your comments.
Are you running on a cluster, or locally?
> protocol.genExtendedStructure("gb1_extended_%d.pdb" % seed)
>
> the last command is what is causing 'some' of the processes to irregularly
> exit.
> If I remove the argument (gb1_extended_%d.pdb" % seed), will some of the
> multiple processes still attempt to write ?
>
does it work ok if you change the line to
protocol.genExtendedStructure()
??
thanks--
Charles
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