Question #644873 on Yade changed:
https://answers.launchpad.net/yade/+question/644873

Jan Stránský posted a new comment:
@Christian: for MWE, see #1 (1st answer, actually Mohsen's comment) of this 
thread.
After a quick look, the only suspicious circumstance I saw was that the spheres 
were overlapping
Jan

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