Question #693698 on Yade changed: https://answers.launchpad.net/yade/+question/693698
Sacha Duverger posted a new comment: Thank you for your answers, Before trying to compile with g++-7 I emptied the "build" and "install" directories (with "rm -r build/* install/*"), this counts has a fresh directory right? Anyway, I tried to start from a really fresh directory (with another name) and had the same problem. The g++-9 installed on my machine worked well when I used it to compile another package (this package is the reason why I upgraded g++ in the first place). Can there still be a problem with g++-9's necessary packages while it already worked for another package than YADE? I tried to compile YADE with clang but I don't see where I can identify which package cause problems with g++. See [1] for the outputs of cmake and make install. I also tried to uninstall and reinstall all of my g++ versions, hoping that it could fix problems on the necessary packages, but it still doesn't work. #################################################################################################################################################################################### [1] : Running cmake and make with clang ## cmake command cmake -DENABLE_GUI=ON -DENABLE_MPI=OFF -DENABLE_PFVFLOW=OFF -DENABLE_TWOPHASEFLOW=OFF -DENABLE_LBMFLOW=OFF -DENABLE_POTENTIAL_BLOCKS=OFF -DCMAKE_CXX_COMPILER=clang -DCMAKE_INSTALL_PREFIX=../install ../trunk ## cmake output -- The C compiler identification is Clang 6.0.0 -- The CXX compiler identification is Clang 6.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Version is set to 2020-10-20.git-427f64c -- GCC Version >= 4.8. Adding -save-temps -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Log filtering: enabled -- Enabling boost::log library and DEBUG=OFF. Logging will work nicely, backtraces will not have debug info, files will be small. Loop on the following python versions and check available dependencies:3.8;3.7;3.6;3.5;3.4;3.3;3.2;3.1;3.0;2.7;2.6 -- Found PythonInterp: /usr/bin/python (found version "2.7.17") -- Found PythonInterp: /usr/bin/python3.6 (found version "3.6.9") Python version 3.6.9 found, try to import dependencies... -- Found NumPy: version "1.18.4" /home/sacha.duverger/.local/lib/python3.6/site-packages/numpy/core/include -- Found IPython: /usr/lib/python3/dist-packages/IPython -- Found matplotlib: /home/sacha.duverger/.local/lib/python3.6/site-packages/matplotlib -- Found pygraphviz: /usr/lib/python3/dist-packages/pygraphviz -- Found Xlib: /usr/lib/python3/dist-packages/Xlib -- Found future: /usr/lib/python3/dist-packages/future -- Found past: /usr/lib/python3/dist-packages/past -- Found tkinter: /usr/lib/python3.6/tkinter -- Boost_VERSION: 106501 -- Boost_LIB_VERSION: 1_65_1 -- Boost_INCLUDE_DIRS: /usr/include -- Boost_LIBRARIES: /usr/lib/x86_64-linux-gnu/libboost_python3-py36.so/usr/lib/x86_64-linux-gnu/libboost_thread.so-lpthread/usr/lib/x86_64-linux-gnu/libboost_filesystem.so/usr/lib/x86_64-linux-gnu/libboost_iostreams.so/usr/lib/x86_64-linux-gnu/libboost_regex.so/usr/lib/x86_64-linux-gnu/libboost_serialization.so/usr/lib/x86_64-linux-gnu/libboost_system.so/usr/lib/x86_64-linux-gnu/libboost_date_time.so/usr/lib/x86_64-linux-gnu/libboost_log.so/usr/lib/x86_64-linux-gnu/libboost_chrono.so/usr/lib/x86_64-linux-gnu/libboost_atomic.so/usr/lib/x86_64-linux-gnu/libboost_log_setup.so Found all python dependencies with version 3.6.9, will compile yade with that. -- Chosen compiler flags are: CMAKE_CXX_FLAGS = -Werror -Wformat -Wformat-security -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized -Wfloat-conversion -Wcast-align -Wdisabled-optimization -Wtrampolines -Wpointer-arith -Wswitch-bool -Wwrite-strings -Wnon-virtual-dtor -Wreturn-local-addr -Wno-error=maybe-uninitialized -Wno-comment -Wno-error=cpp -fdce -fstack-protector-strong -- Determining preferred precision of Real numbers -- Will now try to find python-mpmath using /usr/bin/python3.6 -- Disabling RealHP<N>, this compiler is too old to make this work. -- mpfr disabled -- Will use PrecisionDouble as Real type with 15 decimal places precision and use 64 bits of storage. -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Eigen3, version: 3.3.4 -- Disable vectorization CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkIOParallelXML' component is 'IOParallelXML' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkCommonCore' component is 'CommonCore' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkIOImage' component is 'IOImage' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkIOXML' component is 'IOXML' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkFiltersCore' component is 'FiltersCore' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkImagingCore' component is 'ImagingCore' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkRenderingCore' component is 'RenderingCore' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkImagingGeneral' component is 'ImagingGeneral' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-config.cmake:71 (message): The new name for the 'vtkImagingHybrid' component is 'ImagingHybrid' Call Stack (most recent call first): CMakeLists.txt:642 (FIND_PACKAGE) -- Found Threads: TRUE -- Found VTK -- Found OpenMP_C: -fopenmp=libomp (found version "3.1") -- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) -- Could NOT find OpenMP (missing: OpenMP_CXX_FOUND) (found version "3.1") -- OpenMP NOT found -- GTS using gts-config /usr/bin/gts-config -- Using GTS from /usr CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message): The package name passed to `find_package_handle_standard_args` (PkgConfig) does not match the name of the calling package (glib2). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindPkgConfig.cmake:59 (find_package_handle_standard_args) cMake/Findglib2.cmake:30 (INCLUDE) CMakeLists.txt:675 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for one of the modules 'glib-2.0' -- Found GLib2: glib-2.0 /usr/include/glib-2.0;/usr/lib/x86_64-linux-gnu/glib-2.0/include -- Looking for include file glib/gregex.h -- Looking for include file glib/gregex.h - not found -- Found GTS CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindOpenGL.cmake:305 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib/x86_64-linux-gnu/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib/x86_64-linux-gnu/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib/x86_64-linux-gnu/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): CMakeLists.txt:693 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so -- Found GLUT: /usr/lib/x86_64-linux-gnu/libglut.so -- USE QT5 -- Found QGLVIEWER-qt5: /usr/include/QGLViewer -- Found GUI-Qt5-LIBS -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so -- Found GMP: /usr/include/x86_64-linux-gnu -- Found CGAL: /usr/include, /usr/lib/x86_64-linux-gnu/libCGAL.so -- GMP libs: /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libgmpxx.so -- CGAL NOT found -- Found GL2PS: /usr/lib/x86_64-linux-gnu/libgl2ps.so -- Found GL2PS -- Found OpenBlas: /usr/lib/x86_64-linux-gnu/libopenblas.so -- BLAS_INCLUDE_DIR=/usr/include/x86_64-linux-gnu -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libopenblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Found OpenBlas -- Found Lapack -- md5sum of freegult /usr/include/GL/freeglut_std.h is: 791a2febd8584ec530cdd7676191b6d5 -- freegult version is 2.8.1 Yade will be installed to /home/sacha.duverger/packages/yade/install -- Suffix is set to -2020-10-20.git-427f64c -- LIBRARY_OUTPUT_PATH is set to lib/x86_64-linux-gnu -- runtimePREFIX is set to /home/sacha.duverger/packages/yade/install -- Could NOT find gts (missing: PY_gts) -- Use embedded version of gts. Please, consider installing the corresponding package -- linking -lquadmath skipped -- VTK version >7 is found -- =========================================================== -- Yade configured with following features: BoostLog PrecisionDouble Odeint VTK GTS GUI-Qt5 FEMLIKE GL2PS PotentialParticles -- Disabled features: RealHP mpmath MPFR OPENMP CGAL PFVFLOW LINSOLV MPI TWOPHASEFLOW SPH DEFORM LIQMIGRATION LBMFLOW MASK_ARBITRARY THERMAL PARTIALSAT PROFILING PotentialBlocks -- Using MAX_LOG_LEVEL=5, ENABLE_LOGGER=ON -- Optimized build -- C++ standard version: 14 -- =========================================================== -- Configuring done -- Generating done -- Build files have been written to: /home/sacha.duverger/packages/yade/build ## make install output Scanning dependencies of target _GLViewer_autogen [ 0%] Automatic MOC for target _GLViewer Scanning dependencies of target _gts Scanning dependencies of target _packObb [ 0%] Building CXX object py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o [ 1%] Building CXX object py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o Scanning dependencies of target _polyhedra_utils [ 1%] Building CXX object py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o clang: error: unknown argument: '-fdce' py/CMakeFiles/_gts.dir/build.make:81: recipe for target 'py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o' failed make[2]: *** [py/CMakeFiles/_gts.dir/3rd-party/pygts-0.3.1/cleanup.cpp.o] Error 1 CMakeFiles/Makefile2:355: recipe for target 'py/CMakeFiles/_gts.dir/all' failed make[1]: *** [py/CMakeFiles/_gts.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... clang: error: unknown argument: '-fdce' py/CMakeFiles/_packObb.dir/build.make:81: recipe for target 'py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o' failed make[2]: *** [py/CMakeFiles/_packObb.dir/pack/_packObb.cpp.o] Error 1 CMakeFiles/Makefile2:437: recipe for target 'py/CMakeFiles/_packObb.dir/all' failed make[1]: *** [py/CMakeFiles/_packObb.dir/all] Error 2 clang: error: unknown argument: '-fdce' py/CMakeFiles/_polyhedra_utils.dir/build.make:81: recipe for target 'py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o' failed make[2]: *** [py/CMakeFiles/_polyhedra_utils.dir/_polyhedra_utils.cpp.o] Error 1 CMakeFiles/Makefile2:410: recipe for target 'py/CMakeFiles/_polyhedra_utils.dir/all' failed make[1]: *** [py/CMakeFiles/_polyhedra_utils.dir/all] Error 2 [ 1%] Built target _GLViewer_autogen Makefile:148: recipe for target 'all' failed make: *** [all] Error 2 You received this question notification because your team yade-users is an answer contact for Yade. _______________________________________________ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp