Question #695081 on Yade changed: https://answers.launchpad.net/yade/+question/695081
Kan Su posted a new comment: Thanks, It works! After I copied all files from potentialVTKRecorders/ver9/ to potentialVTKRecorders/ver8.2/, all checks passed! ``` yade --checkall Welcome to Yade 2021.01a Using python version: 3.9.1 (default, Dec 13 2020, 11:55:53) [GCC 10.2.0] /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) ################################### running: checkViscElPM.py Status: success, time spent on this check: 0:00:00.194854 ___________________________________ ################################### running: checkPolyhedraCrush.py CGAL version is (4, 14, 3) . Will test for (cgal version > 4.9) and (cgal version < 5.1.1) <WARNING> PolyhedraSplitter:96 virtual void yade::PolyhedraSplitter::action(): be careful, the PolyhedraSplitter returns different results depending on CGAL version! This will not produce reproducible calculations. For details see https://gitlab.com/yade-dev/trunk/issues/45 Checkpoint: force values and number of bodies are OK! Iteration 166 Status: success, time spent on this check: 0:00:00.104968 ___________________________________ ################################### running: checkMPI4PYcomm.py Master: will spawn 1 workers running: /usr/bin/yade ['/usr/lib/yade/py/yade/tests/checks/checkMPI4PYcomm.py'] /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Worker1: spawned! ____ MPI comm times: ____ 1e4 integers in a python list: 0.0005977869033813477 1e4 integers in a python array: 6.968975067138672e-05 Status: success, time spent on this check: 0:00:00.874305 ___________________________________ ################################### running: checkAvoidSelfInteractionMask.py testing collider.avoidSelfInteractionMask 0 bb br gg gr rr 1 bb br gr 2 br gg gr 3 br gr Status: success, time spent on this check: 0:00:00.004887 ___________________________________ ################################### running: checkPotentialVTKRecorders.py checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/ppcontactPoint.10.vtu checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/ppId.10.vtu checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pp-pb.10.vtp checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/ppvel.10.vtu non-matching lines: 0 checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pbcontactPoint.10.vtu checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pbId.10.vtu checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pb-pb.10.vtp checking file: /tmp/tmpiu_jfshd/potentialVTKRecorders/pbvel.10.vtu non-matching lines: 0 Status: success, time spent on this check: 0:00:00.087385 ___________________________________ ################################### running: checkViscElPM2.py Status: success, time spent on this check: 0:00:00.202185 ___________________________________ ################################### running: check_TwoPhaseFlowEngine_PressureInjection.py /usr/lib/yade/py/yade/plot.py:463: MatplotlibDeprecationWarning: The 'verts' parameter of scatter() was deprecated in Matplotlib 3.2 and will be removed two minor releases later. If any parameter follows 'verts', they should be passed as keyword, not positionally. scatter=pylab.scatter(scatterPt[0] if not math.isnan(scatterPt[0]) else 0,scatterPt[1] if not math.isnan(scatterPt[1]) else 0,s=scatterSize,color=line.get_color(),**scatterMarkerKw) File ./vtk moved into /tmp/tmpftqt2gzj/ directory File ./Test.txt moved into /tmp/tmpftqt2gzj/ directory Status: success, time spent on this check: 0:00:04.746889 ___________________________________ ################################### running: checkVTKRecorder.py checkVTKRecorder checking file: /tmp/tmpf1dlsg0k/vtk_testing/10.vtm checking file: /tmp/tmpf1dlsg0k/vtk_testing/10/10_0.vtu checking file: /tmp/tmpf1dlsg0k/vtk_testing/10/10_2.vtp non-matching lines: 113 Status: success, time spent on this check: 0:00:00.062857 ___________________________________ ################################### running: checkTestDummy.py checkTest mechanism Status: success, time spent on this check: 0:00:00.001540 ___________________________________ ################################### Skipping checkMPISilo.py, because it is in skipScripts. ################################### running: checkLubrication.py Status: success, time spent on this check: 0:00:01.686369 ___________________________________ ################################### running: checkLubricationWithRoughness.py Status: success, time spent on this check: 0:00:01.726809 ___________________________________ ################################### running: checkMPYcomm.py Master: will spawn 9 workers running: /usr/bin/yade ['/usr/lib/yade/py/yade/tests/checks/checkMPYcomm.py'] /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Master: will spawn 7 workers running: /usr/bin/yade ['/usr/lib/yade/py/yade/tests/checks/checkMPYcomm.py'] /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Master: MPYcomm disconnect Status: success, time spent on this check: 0:00:01.828741 ___________________________________ ################################### Skipping checkList.py, because it is in skipScripts. ################################### running: checkWirePM.py Status: success, time spent on this check: 0:00:19.050272 ___________________________________ ################################### running: checkDEM-PFVPressureInjection.py File ./vtk moved into /tmp/tmpb1nhiz36/ directory File ./Test.txt moved into /tmp/tmpb1nhiz36/ directory Status: success, time spent on this check: 0:00:36.501007 ___________________________________ ################################### running: checkColliderCorrectness.py checkColliderCorrectness for InsertionSortCollider Status: success, time spent on this check: 0:00:04.306394 ___________________________________ ################################### running: checkSaveLoadClumps.py Kinetic energy OK 1.164931E-09 Kinetic energy OK 1.151232E-01 Kinetic energy OK 1.151462E-01 Kinetic energy OK 1.174632E-01 Status: success, time spent on this check: 0:01:30.646536 ___________________________________ ################################### running: DEM-PFV-check.py DEM-PFV: difference in permeability: 0.044073804895852504 vs. target 0.040399916554 DEM-PFV: difference in final pressure: 612.681692169412 vs. target 628.314160434 DEM-PFV: difference in final deformation -0.002676702421817419 vs. target -0.00258113045083 Status: success, time spent on this check: 0:00:14.210633 ___________________________________ ################################### running: checkLiquidMigration.py Status: success, time spent on this check: 0:00:00.164997 ___________________________________ ################################### running: checkMPI.py /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) /usr/lib/yade/py/yade/__init__.py:76: RuntimeWarning: to-Python converter for boost::shared_ptr<yade::PartialSatClayEngine> already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Warning: freeglut versions higher than 2.8.1 are known to crash, see https://gitlab.com/yade-dev/trunk/merge_requests/160 https://gitlab.com/yade-dev/trunk/-/issues/155 https://gitlab.com/yade-dev/trunk/-/issues/107 Status: success, time spent on this check: 0:00:03.764539 ___________________________________ ################################### running: checkGravityRungeKuttaCashKarp54.py checkGravityRungeKuttaCashKarp54.py : yade precision is 15 decimal places. Will use error tolerance of: 1e-12 Note: for high precision calculations use yade.math.toHP1(...) see this: g = yade.math.toHP1(-9.81) ## produces: -9.81 g = -9.81 ## produces: -9.81 See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. <WARNING> GravityEngine:24 virtual void yade::GravityEngine::action(): GravityEngine is deprecated, consider using Newton::gravity instead. Status: success, time spent on this check: 0:00:00.082308 ___________________________________ ################################### running: checkGravity.py Status: success, time spent on this check: 0:00:03.329603 ___________________________________ ################################### running: checkColliderConstantness.py checkColliderConstantness for InsertionSortCollider Status: success, time spent on this check: 0:00:00.390193 ___________________________________ ################################### running: checkWeight.py Precalculated weight 756.093387 Obtained weight 756.093387 Status: success, time spent on this check: 0:00:00.125942 ___________________________________ ################################### running: checkTestTriax.py File ./checkTest.yade moved into /tmp/tmphgrhjn5n/ directory File ./_Unloaded_380_3.spheres moved into /tmp/tmphgrhjn5n/ directory File ./_Unloaded_380_3.xml moved into /tmp/tmphgrhjn5n/ directory File ./WallStresses moved into /tmp/tmphgrhjn5n/ directory Status: success, time spent on this check: 0:00:00.212926 ___________________________________ ################################### running: checkClumpHopper.py Iter 10000: Total number of generated spheres 1448, removed particles 0, current particles 1448, kinEnergy 13755.3 Iter 20000: Total number of generated spheres 2896, removed particles 100, current particles 2796, kinEnergy 32685.4 Iter 30000: Total number of generated spheres 3620, removed particles 484, current particles 3136, kinEnergy 24374.8 Iter 40000: Total number of generated spheres 5068, removed particles 934, current particles 4134, kinEnergy 22952.1 Status: success, time spent on this check: 0:01:29.283312 ___________________________________ ################################### running: checkBlockGen.py Adding slavesThe Block Generation is completed /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:83: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. sumVertices = sum( len(b.shape.vertices) for b in O.bodies ) #38 vertices in total /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:90: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. a = sum(len(b.shape.a) for b in O.bodies ) /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:91: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. b = sum(len(b.shape.b) for b in O.bodies ) /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:92: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. c = sum(len(b.shape.c) for b in O.bodies ) /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:93: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. d = sum(len(b.shape.d) for b in O.bodies ) /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:103: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. sumVolume = sum( b.shape.volume for b in O.bodies ) /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:112: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. sumMass = sum (b.state.mass for b in O.bodies) /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:123: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. x = sum( b.state.pos[0]*b.shape.volume for b in O.bodies )/sumVolume /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:124: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. y = sum( b.state.pos[1]*b.shape.volume for b in O.bodies )/sumVolume /usr/lib/yade/py/yade/tests/checks/checkBlockGen.py:125: DeprecationWarning: Calling np.sum(generator) is deprecated, and in the future will give a different result. Use np.sum(np.fromiter(generator)) or the python sum builtin instead. z = sum( b.state.pos[2]*b.shape.volume for b in O.bodies )/sumVolume Status: success, time spent on this check: 0:00:00.042930 ___________________________________ ################################### running: checkPotentialParticles.py Status: success, time spent on this check: 0:00:00.044981 ___________________________________ ################################### running: checkPotentialBlocks.py Status: success, time spent on this check: 0:00:00.043517 ___________________________________ ################################### running: checkCapillaryModels.py Status: success, time spent on this check: 0:00:00.042101 ___________________________________ ################################### running: checkViscElEng.py Precalculated en value 0.736356797441 Obtained en value 0.736356797441 Status: success, time spent on this check: 0:00:00.403344 ___________________________________ ################################### running: checkJCFpm.py Status: success, time spent on this check: 0:00:06.237038 ___________________________________ WARNING: some checks took longer than 30 seconds. Most time spend on a single check: 0:01:30.646536 *** ALL CHECKS PASSED *** ``` -- You received this question notification because your team yade-users is an answer contact for Yade. _______________________________________________ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
