I have also been thinking about this, and am using the following arrangement to 
simulate "dependency" (really just documenting "associatedness").

Under /Systems, I have 2 subgroups:  "Services" and "Infrastructure".  

Under "Services", I have common names for a service in the ITIL sense (some 
generic term like "Web Portal" or "Data Warehouse").

Under "Infastructure", I have subgroups like "OS/Linux" and "DBMS/Mysql" and 
"Application/Exchange".

Under "Groups", I have 2 categories, "Lifecycle" and "Organization".  
"Lifecycle" has subgroups for DEV or PROD, while "Organization" refers to 
corporate (human) structure.

By controlling a Device's membership to various of these groups, I can set up 
alerts and other functions depending on that membership. 

This does not give the kind of dependency-related info that is mentioned 
(app->DB->SAN) , but it does allow me to have (app,db,SAN) -related devices be 
a member of a given application's group, and to have associated functions 
dependent on that group.




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