AddendumThere may in fact be two databases used. There's the one described 
below (not within the notebook directory), and one inside the notebook 
directory. The docs aren't consistent, and I thought one was obsolete, but stat 
shows recent access to both. So I'm not sure what's going on.Anyway, I think 
there was a change (not sure how long ago) with zim's cache directory-- 
Currently each notebook has a cache directory (whose name is derived from the 
directory path to the notebook) within the per-user directory described 
below.-- Looks like zim uses the XDG Base Directory Specification (see 
https://standards.freedesktop.org/basedir-spec/basedir-spec-latest.html)See 
also http://zim-wiki.org/manual/Help/Config_Files.html, though that discusses 
config files, not the cache.-- This calls for a single base cache directory, 
which defaults  to ~/.cache, but (I think) can be overridden via the 
XDG_CACHE_HOME environment variable,
    On Monday, September 4, 2017, 4:38:19 PM PDT, Loren Rosen 
<lorenro...@yahoo.com> wrote:  
 
 (Yet again probably will probably not be treated as a response.)Not sure of 
your current status, but here's my understanding:-- Zim keeps the important 
parts of a notebook as ordinary text files.-- But there are a few things it 
keeps in a cache directory. If need be those can be re-created, but, for 
efficiency, they're kept around.-- One such thing is its index, which is kept 
as a sqlite3 database. If that's missing, it will be created when zim starts. 
In particular, if the database gets corrupted, you can probably workaround that 
by deleting the db file and having zim re-create it from scratch.-- The 'cache' 
directory and the 'index' directory are the same (I think), but the terminology 
may not be consistent.
-- Usually the cache directory is a hidden directory inside the notebook 
directory (the directory that contains all the notes for a notebook), but by 
setting a command-line flag it could be elsewhere.-- Not sure how good zim is 
at coping with the cache directory not existing.-- Also, not sure how good zim 
is at dealing with other index-creation failures.
My guess is that your problem(s) have to do with the one or both of the last 
two. So try-- re-creating the default .zim directory in the notebook (prob. 
~/Notebooks/Notes/.zim), then normal start for zim.-- create a separate 
directory, then start zim with the --index flag. Don't use the directory for 
other things, not even other zim notebooks.In both cases make sure you can read 
and write to the directory.If neither works, most likely it's due to an 
index-creation failure, and might require further testing or setting a debugger 
breakpoint or running a version of zim with better diagnostics.

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