Thanks Noel, Yes, I used GitHub's import function when I imported the Mercurial repos from BitBucket. That worked quite well.
Indeed Jekyll is not necessarily needed. However the xml-cml.org pages (as they exist right now) rely on some server-side-includes to paste common elements (like headers, footers, menu, etc.) into the right place for each page. Therefore some sort of generator-script is needed and that could be Jekyll or could be something else. And Peter: A big thumbs up for Python. It would really be great to port the CML-validator and later even the JUMBO-converters to Python. It was a wise decision to encode the "rules" in XML so they can be re-used when re-implementing the tools in a different language. Maybe someday I'll find time to contribute to those efforts. Cheers, Oliver Oliver Stueker Research Consultant, ACENET A Compute Canada Regional Partner On Fri, Jun 25, 2021 at 3:37 PM Noel O'Boyle <baoille...@gmail.com> wrote: > Just to note that importing from Bitbucket is handled by GitHub. Also that > GitHub pages can serve HTML by turning off Jekyll (a process which I'd > recommend). > > - Noel > > On Fri, 25 Jun 2021, 16:19 Peter Murray-Rust, <pm...@cam.ac.uk> wrote: > >> Oliver and colleagues did a really great job in porting CML code. >> >> It is valuable and will continue to be. Wikidata+CML adds a lot of >> potential to semantic chemistry. >> >> We are still continuing to work on (a) plant science and (b) battery >> materials , both of which will need a semantic framework. >> >> I have moved from Java to Python and it would be relatively easy to >> migrate CML to Python. XML has a considerable overhead in Java which can be >> bypassed in Python. So we have an XML paper-reader (AMI) and it would be >> fun to add chemistry. But it needs users to help drive it. A circular >> problem but one which gets continually easier to solve. >> >> P. >> >> >> >> On Fri, Jun 25, 2021 at 3:23 PM Egon Willighagen < >> egon.willigha...@gmail.com> wrote: >> >>> >>> On Fri, Jun 25, 2021 at 3:25 PM Oliver Stueker <oliver.stue...@mun.ca> >>> wrote: >>> >>>> Back between Christmas 2019 and the early days of 2020, Mark and I made >>>> good progress in enabling CI (Travis) on many of the projects. >>>> At some point I had to stop because I needed to get access to publish >>>> modules on Maven Central, which took a few days. Then 2020 happened. >>>> >>> >>> Indeed. >>> >>> I haven't touched those repos in 18 months now >>>> >>> >>> Yes, I saw that... time has passed by quickly... it's all such a blur >>> >>> >>>> and I don't know when I'll take the time to continue working on them. >>>> >>> >>> This is what we have the Dr. Who model for :) >>> >>> >>>> I still have the plan to get the jumbo-converters and all their >>>> dependencies set-up for CI and published to Maven Central, but I don't have >>>> a timeline, as for me this is just a hobby-project. >>>> >>> >>> Understood! (same here) >>> >>> >>>> At some point I'd even like to work on porting the www.xml-cml.org >>>> website to use Jekyll and be hosted from a GitHub-repo, so that we can >>>> expand the dictionaries with Pull-requests. >>>> >>> >>> Yes, that sounds good. >>> >>> >>>> But if you need CMLXOM or other parts to be published in Maven Central, >>>> I'd say go ahead. >>>> >>> >>> Okay, going ahead and will use org.blueoblelisk as Maven groupId >>> >>> Egon >>> >>> >>> >>>> >>>> Cheers, >>>> Oliver >>>> >>>> Oliver Stueker >>>> Research Consultant, ACENET >>>> 709.864.3021 | www.ace-net.ca | @computeatlantic >>>> >>>> A Compute Canada Regional Partner >>>> >>>> >>>> On Fri, Jun 25, 2021 at 3:46 AM Egon Willighagen < >>>> egon.willigha...@gmail.com> wrote: >>>> >>>>> >>>>> Hi Oliver, Mark, all >>>>> >>>>> On Fri, Dec 13, 2019 at 9:01 PM Oliver Stueker <oliver.stue...@mun.ca> >>>>> wrote: >>>>> >>>>>> We would like to get your feedback on a number of points: >>>>>> >>>>> >>>>>> - Do you also think that https://github.com/BlueObelisk would be >>>>>> a good home for the WWMM and CML repositories? The names wwmm and >>>>>> cml are >>>>>> already taken on GitHub.com. >>>>>> >>>>>> I think it worked out quite well. >>>>> >>>>>> >>>>>> - What are your thoughts? >>>>>> >>>>>> What are people's current plans to make modules available on Maven >>>>> Central? For example, I just discovered the CMLXOM needs updates and needs >>>>> to be uploaded to Maven Central. >>>>> >>>>> - Has anyone already started this? >>>>> - Should we use io.github.blueobelisk as (new) group ID? >>>>> >>>>> I have a Sonatype account and can set something up, but want to make >>>>> sure no one else is already planning this. >>>>> >>>>> Egon >>>>> >>>>> -- >>>>> This year I am stepping down as co-Editor-in-Chief of the Journal of >>>>> Cheminformatics, because of a conflict of interest with Springer Nature. >>>>> See https://twitter.com/egonwillighagen/status/1403299501947899907 >>>>> >>>>> ----- >>>>> E.L. Willighagen >>>>> Department of Bioinformatics - BiGCaT >>>>> Maastricht University (http://www.bigcat.unimaas.nl/) >>>>> Twitter/Mastodon: @egonwillighagen >>>>> <https://twitter.com/egonwillighagen> / @egonw >>>>> <https://scholar.social/@egonw> >>>>> Homepage: http://egonw.github.com/ >>>>> Blog: http://chem-bla-ics.blogspot.com/ >>>>> PubList: https://www.zotero.org/egonw >>>>> ORCID: 0000-0001-7542-0286 <http://orcid.org/0000-0001-7542-0286> >>>>> ImpactStory: https://impactstory.org/u/egonwillighagen >>>>> >>>> >>> >>> -- >>> This year I am stepping down as co-Editor-in-Chief of the Journal of >>> Cheminformatics, because of a conflict of interest with Springer Nature. >>> See https://twitter.com/egonwillighagen/status/1403299501947899907 >>> >>> ----- >>> E.L. Willighagen >>> Department of Bioinformatics - BiGCaT >>> Maastricht University (http://www.bigcat.unimaas.nl/) >>> Twitter/Mastodon: @egonwillighagen <https://twitter.com/egonwillighagen> >>> / @egonw <https://scholar.social/@egonw> >>> Homepage: http://egonw.github.com/ >>> Blog: http://chem-bla-ics.blogspot.com/ >>> PubList: https://www.zotero.org/egonw >>> ORCID: 0000-0001-7542-0286 <http://orcid.org/0000-0001-7542-0286> >>> ImpactStory: https://impactstory.org/u/egonwillighagen >>> >> >> >> -- >> "I always retain copyright in my papers, and nothing in any contract I >> sign with any publisher will override that fact. You should do the same". >> >> Peter Murray-Rust >> Reader Emeritus in Molecular Informatics >> Yusuf Hamied Department of Chemistry >> University of Cambridge >> CB2 1EW, UK >> +44-1223-336432 >> _______________________________________________ >> Blueobelisk-discuss mailing list >> Blueobelisk-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/blueobelisk-discuss >> >
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