Oliver and colleagues did a really great job in porting CML code. It is valuable and will continue to be. Wikidata+CML adds a lot of potential to semantic chemistry.
We are still continuing to work on (a) plant science and (b) battery materials , both of which will need a semantic framework. I have moved from Java to Python and it would be relatively easy to migrate CML to Python. XML has a considerable overhead in Java which can be bypassed in Python. So we have an XML paper-reader (AMI) and it would be fun to add chemistry. But it needs users to help drive it. A circular problem but one which gets continually easier to solve. P. On Fri, Jun 25, 2021 at 3:23 PM Egon Willighagen <egon.willigha...@gmail.com> wrote: > > On Fri, Jun 25, 2021 at 3:25 PM Oliver Stueker <oliver.stue...@mun.ca> > wrote: > >> Back between Christmas 2019 and the early days of 2020, Mark and I made >> good progress in enabling CI (Travis) on many of the projects. >> At some point I had to stop because I needed to get access to publish >> modules on Maven Central, which took a few days. Then 2020 happened. >> > > Indeed. > > I haven't touched those repos in 18 months now >> > > Yes, I saw that... time has passed by quickly... it's all such a blur > > >> and I don't know when I'll take the time to continue working on them. >> > > This is what we have the Dr. Who model for :) > > >> I still have the plan to get the jumbo-converters and all their >> dependencies set-up for CI and published to Maven Central, but I don't have >> a timeline, as for me this is just a hobby-project. >> > > Understood! (same here) > > >> At some point I'd even like to work on porting the www.xml-cml.org >> website to use Jekyll and be hosted from a GitHub-repo, so that we can >> expand the dictionaries with Pull-requests. >> > > Yes, that sounds good. > > >> But if you need CMLXOM or other parts to be published in Maven Central, >> I'd say go ahead. >> > > Okay, going ahead and will use org.blueoblelisk as Maven groupId > > Egon > > > >> >> Cheers, >> Oliver >> >> Oliver Stueker >> Research Consultant, ACENET >> 709.864.3021 | www.ace-net.ca | @computeatlantic >> >> A Compute Canada Regional Partner >> >> >> On Fri, Jun 25, 2021 at 3:46 AM Egon Willighagen < >> egon.willigha...@gmail.com> wrote: >> >>> >>> Hi Oliver, Mark, all >>> >>> On Fri, Dec 13, 2019 at 9:01 PM Oliver Stueker <oliver.stue...@mun.ca> >>> wrote: >>> >>>> We would like to get your feedback on a number of points: >>>> >>> >>>> - Do you also think that https://github.com/BlueObelisk would be a >>>> good home for the WWMM and CML repositories? The names wwmm and cml are >>>> already taken on GitHub.com. >>>> >>>> I think it worked out quite well. >>> >>>> >>>> - What are your thoughts? >>>> >>>> What are people's current plans to make modules available on Maven >>> Central? For example, I just discovered the CMLXOM needs updates and needs >>> to be uploaded to Maven Central. >>> >>> - Has anyone already started this? >>> - Should we use io.github.blueobelisk as (new) group ID? >>> >>> I have a Sonatype account and can set something up, but want to make >>> sure no one else is already planning this. >>> >>> Egon >>> >>> -- >>> This year I am stepping down as co-Editor-in-Chief of the Journal of >>> Cheminformatics, because of a conflict of interest with Springer Nature. >>> See https://twitter.com/egonwillighagen/status/1403299501947899907 >>> >>> ----- >>> E.L. Willighagen >>> Department of Bioinformatics - BiGCaT >>> Maastricht University (http://www.bigcat.unimaas.nl/) >>> Twitter/Mastodon: @egonwillighagen <https://twitter.com/egonwillighagen> >>> / @egonw <https://scholar.social/@egonw> >>> Homepage: http://egonw.github.com/ >>> Blog: http://chem-bla-ics.blogspot.com/ >>> PubList: https://www.zotero.org/egonw >>> ORCID: 0000-0001-7542-0286 <http://orcid.org/0000-0001-7542-0286> >>> ImpactStory: https://impactstory.org/u/egonwillighagen >>> >> > > -- > This year I am stepping down as co-Editor-in-Chief of the Journal of > Cheminformatics, because of a conflict of interest with Springer Nature. > See https://twitter.com/egonwillighagen/status/1403299501947899907 > > ----- > E.L. Willighagen > Department of Bioinformatics - BiGCaT > Maastricht University (http://www.bigcat.unimaas.nl/) > Twitter/Mastodon: @egonwillighagen <https://twitter.com/egonwillighagen> > / @egonw <https://scholar.social/@egonw> > Homepage: http://egonw.github.com/ > Blog: http://chem-bla-ics.blogspot.com/ > PubList: https://www.zotero.org/egonw > ORCID: 0000-0001-7542-0286 <http://orcid.org/0000-0001-7542-0286> > ImpactStory: https://impactstory.org/u/egonwillighagen > -- "I always retain copyright in my papers, and nothing in any contract I sign with any publisher will override that fact. You should do the same". Peter Murray-Rust Reader Emeritus in Molecular Informatics Yusuf Hamied Department of Chemistry University of Cambridge CB2 1EW, UK +44-1223-336432
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