Hi Dima, I reinstalled xcode and now sage compiles again. Thanks for your help!
Anne On Friday, April 19, 2019 at 12:09:35 PM UTC-7, Dima Pasechnik wrote: > > On Fri, Apr 19, 2019 at 7:20 PM Anne Schilling > <anne1.s...@gmail.com <javascript:>> wrote: > > > > Thank you all for your suggestions! Dima's suggestion did not seem to > fix my problem. > > I did pull from develop again and now the elliptic problem is gone. But > the pillow problem > > is still there: > > do you actually have /usr/lib/system/libsystem_darwin.dylib on your > system? > I suspect it must be present, or else it > > > > [sagelib-8.8.beta3] byte-compiling > /Applications/sage/local/lib/python2.7/site-packages/sage_setup/optional_extension.py > > to optional_extension.pyc > > [sagelib-8.8.beta3] byte-compiling > /Applications/sage/local/lib/python2.7/site-packages/sage_setup/util.py to > util.pyc > > [sagelib-8.8.beta3] running install_egg_info > > [sagelib-8.8.beta3] Writing > /Applications/sage/local/lib/python2.7/site-packages/sage-8.8.beta3-py2.7.egg-info > > > > [sagelib-8.8.beta3] Cleaning up stale installed files.... > > [sagelib-8.8.beta3] - cleaning > /Applications/sage/local/lib/python2.7/site-packages > > [sagelib-8.8.beta3] - cleaning build/lib.macosx-10.9-x86_64-2.7 > > [sagelib-8.8.beta3] Finished cleaning, time: 0.22 seconds. > > [sagelib-8.8.beta3] if [ "$UNAME" = "CYGWIN" ]; then > \ > > [sagelib-8.8.beta3] sage-rebase.sh "$SAGE_LOCAL" 2>/dev/null; > \ > > [sagelib-8.8.beta3] fi > > [sagelib-8.8.beta3] > > [sagelib-8.8.beta3] real 8m42.417s > > [sagelib-8.8.beta3] user 31m53.513s > > [sagelib-8.8.beta3] sys 0m58.010s > > make[2]: *** [all-start] Error 2 > > > > real 8m42.712s > > user 32m26.636s > > sys 1m9.140s > > *************************************************************** > > Error building Sage. > > > > The following package(s) may have failed to build (not necessarily > > during this run of 'make all-start'): > > > > * package: pillow-5.3.0.p0 > > log file: /Applications/sage/logs/pkgs/pillow-5.3.0.p0.log > > build directory: > /Applications/sage/local/var/tmp/sage/build/pillow-5.3.0.p0 > > > > The build directory may contain configuration files and other > potentially > > helpful information. WARNING: if you now run 'make' again, the build > > directory will, by default, be deleted. Set the environment variable > > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. > > > > make[1]: *** [all-start] Error 1 > > make: *** [all] Error 2 > > > > https://www.math.ucdavis.edu/~anne/pillow-5.3.0.p0.log > What is the output of > > otool -L /usr/lib/libSystem.B.dylib > > On my OSX 10.14 system it includes /usr/lib/system/libsystem_darwin.dylib > > (libSystem.B.dylib is a very important system library...) > > Is /usr/lib/system/libsystem_darwin.dylib present on your system? > If not, then you might need to reinstall your OS, or find this file > somewhere... > > If yes, then it's not found by your ld, so you need to fix this somehow. > Probably something like > > sudo update_dyld_shared_cache > > HTH > Dima > > > Dima > > > > > Best, > > > > Anne > > > > On Friday, April 19, 2019 at 9:26:34 AM UTC-7, E. Madison Bray wrote: > >> > >> On Fri, Apr 19, 2019 at 8:30 AM Dima Pasechnik <dim...@gmail.com> > wrote: > >> > > >> > On Fri, Apr 19, 2019 at 7:33 AM Anne Schilling > >> > <anne1.s...@gmail.com> wrote: > >> > > > >> > > This was after I ran 'make distclean'. You can view the logs here: > >> > > > >> > > https://www.math.ucdavis.edu/~anne/elliptic_curves-0.8.p0.log > >> > > >> > ImportError: No module named _sqlite3 > >> > > >> > This look like a silent failure in building sqlite3, which is a > >> > standard package. > >> > >> I guess, besides the toolchain issue, it looks like having a working > >> _sqlite3 module is a dependency of the elliptic_curves package > >> install. > >> > >> In light of https://trac.sagemath.org/ticket/26899 we discussed at > >> some point adding zlib to the list of extension modules that Python > >> absolutely must build successfully. But it seems that never got done. > >> I've opened a ticket for this and mentioned adding _sqlite3 to the > >> list as well: https://trac.sagemath.org/ticket/27705 > >> > >> This would not immediately solve the problem Anne had but at least > >> the root of the problem would be caught earlier. Then, hopefully, the > >> solution Dima mentioned should work. This seems to be more-or-less > >> the same problem as with zlib, and XCode no longer including standard > >> headers in /usr/include by default. > >> > >> > >> > >> > > https://www.math.ucdavis.edu/~anne/pillow-5.3.0.p0.log > >> > this looks like a problem with your toolchain > >> > > >> > ld: file not found: /usr/lib/system/libsystem_darwin.dylib for > >> > architecture x86_64 > >> > > >> > discussed e.g. on > >> > https://github.com/Homebrew/homebrew-php/issues/4590 > >> > this and other similar places suggest to do > >> > > >> > sudo xcode-select -s /Library/Developer/CommandLineTools > >> > > >> > HTH > >> > Dima > >> > > >> > > >> > > > >> > > Anne > >> > > > >> > > On Thursday, April 18, 2019 at 10:07:28 PM UTC-7, Dima Pasechnik > wrote: > >> > >> > >> > >> How about posting logs of packages that failed to build? > >> > >> > >> > >> It would also be great to know whether it was a build from > scratch. > >> > >> > >> > >> On Fri, 19 Apr 2019 07:03 Anne Schilling, <anne1.s...@gmail.com> > wrote: > >> > >>> > >> > >>> Hi! > >> > >>> > >> > >>> I have trouble compiling the latest development version of Sage > on MacOS 10.12.6: > >> > >>> > >> > >>> al/share/icons/hicolor/64x64/mimetypes > >> > >>> [giac-1.5.0.37.p1] mkdir > /Applications/sage/local/var/tmp/sage/build/giac-1.5.0.37.p1/inst/Applications/sage/local/share/icons/hicolor/32x32/mimetypes > > > >> > >>> [giac-1.5.0.37.p1] mkdir > /Applications/sage/local/var/tmp/sage/build/giac-1.5.0.37.p1/inst/Applications/sage/local/share/icons/hicolor/16x16/mimetypes > > > >> > >>> [giac-1.5.0.37.p1] > >> > >>> [giac-1.5.0.37.p1] real 7m58.316s > >> > >>> [giac-1.5.0.37.p1] user 24m11.636s > >> > >>> [giac-1.5.0.37.p1] sys 0m54.736s > >> > >>> [giac-1.5.0.37.p1] Copying package files from temporary location > /Applications/sage/local/var/tmp/sage/build/giac-1.5.0.37.p1/inst to > /Applications/sage/local > >> > >>> [giac-1.5.0.37.p1] Successfully installed giac-1.5.0.37.p1 > >> > >>> [giac-1.5.0.37.p1] Deleting temporary build directory > >> > >>> [giac-1.5.0.37.p1] > /Applications/sage/local/var/tmp/sage/build/giac-1.5.0.37.p1 > >> > >>> [giac-1.5.0.37.p1] Finished installing giac-1.5.0.37.p1.spkg > >> > >>> make[2]: *** [all-start] Error 2 > >> > >>> > >> > >>> real 9m56.979s > >> > >>> user 33m21.853s > >> > >>> sys 2m8.502s > >> > >>> *************************************************************** > >> > >>> Error building Sage. > >> > >>> > >> > >>> The following package(s) may have failed to build (not > necessarily > >> > >>> during this run of 'make all-start'): > >> > >>> > >> > >>> * package: elliptic_curves-0.8.p0 > >> > >>> log file: > /Applications/sage/logs/pkgs/elliptic_curves-0.8.p0.log > >> > >>> build directory: > /Applications/sage/local/var/tmp/sage/build/elliptic_curves-0.8.p0 > >> > >>> > >> > >>> * package: pillow-5.3.0.p0 > >> > >>> log file: /Applications/sage/logs/pkgs/pillow-5.3.0.p0.log > >> > >>> build directory: > /Applications/sage/local/var/tmp/sage/build/pillow-5.3.0.p0 > >> > >>> > >> > >>> The build directory may contain configuration files and other > potentially > >> > >>> helpful information. WARNING: if you now run 'make' again, the > build > >> > >>> directory will, by default, be deleted. Set the environment > variable > >> > >>> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. > >> > >>> > >> > >>> make[1]: *** [all-start] Error 1 > >> > >>> make: *** [all] Error 2 > >> > >>> > >> > >>> Does anyone know why? > >> > >>> > >> > >>> Thank you, > >> > >>> > >> > >>> Anne > >> > >>> > >> > >>> -- > >> > >>> You received this message because you are subscribed to the > Google Groups "sage-devel" group. > >> > >>> To unsubscribe from this group and stop receiving emails from it, > send an email to sage-...@googlegroups.com. > >> > >>> To post to this group, send email to sage-...@googlegroups.com. > >> > >>> Visit this group at https://groups.google.com/group/sage-devel. > >> > >>> For more options, visit https://groups.google.com/d/optout. > >> > > > >> > > -- > >> > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > >> > > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-...@googlegroups.com. > >> > > To post to this group, send email to sage-...@googlegroups.com. > >> > > Visit this group at https://groups.google.com/group/sage-devel. > >> > > For more options, visit https://groups.google.com/d/optout. > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-...@googlegroups.com. > >> > To post to this group, send email to sage-...@googlegroups.com. > >> > Visit this group at https://groups.google.com/group/sage-devel. > >> > For more options, visit https://groups.google.com/d/optout. > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-...@googlegroups.com <javascript:>. > > To post to this group, send email to sage-...@googlegroups.com > <javascript:>. > > Visit this group at https://groups.google.com/group/sage-devel. > > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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