[Numpy-discussion] 16ᵗʰ Advanced Scientific Programming in Python in Heraklion, Crete, Greece, 25 August – 1 September, 2024

2024-02-22 Thread Tiziano Zito
many • Pietro Berkes, NAGRA Kudelski, Lausanne Switzerland • Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, innoCampus, Technische Universität Berlin Germany • Verjinia Metodieva, NeuroCure, Charité – Universitätsmedizin Berlin Ger

[Python-announce] 15ᵗʰ Advanced Scientific Programming in Python in Heraklion, Crete, Greece, 27 August – 3 September,2023

2023-03-17 Thread Tiziano Zito
logy, Universität Potsdam Germany • Pamela Hathway, Orange Business, Berlin/Nürnberg Germany • Pietro Berkes, NAGRA Kudelski, Lausanne Switzerland • Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, innoCampus, Technische Universität Be

[Numpy-discussion] 15ᵗʰ Advanced Scientific Programming in Python in Heraklion, Crete, Greece, 27 August – 3 September,2023

2023-03-17 Thread Tiziano Zito
logy, Universität Potsdam Germany • Pamela Hathway, Orange Business, Berlin/Nürnberg Germany • Pietro Berkes, NAGRA Kudelski, Lausanne Switzerland • Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, innoCampus, Technische Universität Be

[Python-Dev] Re: Switching to Discourse

2022-12-11 Thread Tiziano Zito
On Sat 10 Dec, 17:47 +0100, Baptiste Carvello wrote: There is a small catch though: unless I'm mistaken, Discourse won't let you subscribe to just a set of categories, so any filtering has to happen on the Mailman side. Well, it is actually possible to achieve what you want. I have set up

[Numpy-discussion] Re: Add a new inf whose data type is int

2022-11-23 Thread Tiziano Zito
Hi, there's no integer inf, but you can use np.iinfo(np.int64).max or np.iinfo(np.int64).min if you need an upper/lower bound for integers in np.max/np.min Ciao! Tiziano On Tue 22 Nov, 06:27 -, 2601536...@qq.com wrote: Hi, I am a student and I have very little knowledge about python and

Bug#1007813: Newer LIBSVM breaks mdp

2022-03-17 Thread Tiziano Zito
Reported upstream: https://github.com/mdp-toolkit/mdp-toolkit/issues/93 On Thu 17 Mar, 15:19 +0100, Tiziano Zito wrote: Hey, thanks for reporting this! I think this has been addressed upstream already in May 2020: https://github.com/mdp-toolkit/mdp-toolkit/commit

Bug#1007813: Newer LIBSVM breaks mdp

2022-03-17 Thread Tiziano Zito
Hey, thanks for reporting this! I think this has been addressed upstream already in May 2020: https://github.com/mdp-toolkit/mdp-toolkit/commit/e8020f1a4fd5567034ec375bf6fd60510eed32ef We need to wait for a new upstream release of MDP for this commit to be available in a released version

[Python-announce] 14ᵗʰ Advanced Scientific Programming in Python in Bilbao Spain, 5–11 September, 2022

2022-02-21 Thread Tiziano Zito
tute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin Germany • Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw Poland Organizers == Head of the organization for ASPP and responsible for the scient

[Numpy-discussion] 14ᵗʰ Advanced Scientific Programming in Python in Bilbao Spain, 5–11 September, 2022

2022-02-21 Thread Tiziano Zito
tute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin Germany • Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw Poland Organizers == Head of the organization for ASPP and responsible for the scient

[Python-Dev] Re: Roundup to GitHub Issues migration

2021-06-22 Thread Tiziano Zito
Hi, On Mon 21 Jun, 13:48 +0200, Victor Stinner wrote: The requirement for a GitHub account was well known when PEP 581 was accepted. The PEP was approved. It's now time to move on! I think it is important to notice that GitHub actively blocks user registration and activity from countries

Re: [Numpy-discussion] log of negative real numbers -> RuntimeWarning: invalid value encountered in log

2020-05-25 Thread Tiziano Zito
Would a "complex default" mode ever make it into numpy, to behave more like Matlab and other packages with respect to complex number handling? Sure it would make it marginally slower if enabled, but it might open the door to better compatibility when porting code to Python. numpy already has

Bug#958114: can not use because commonutil can not be imported

2020-05-02 Thread Tiziano Zito
Hi Christian, I eventually filed an issue with the PyPI maintainer on GitHub [1] with a request for them to resolve this with upstream directly, as that seemed to be the most appropriate course of action. Thanks for reporting the issue. Should I open a sister-issue on libsvm upstream GitHub

Bug#958114: can not use because commonutil can not be imported

2020-05-02 Thread Tiziano Zito
Hi Christian, I eventually filed an issue with the PyPI maintainer on GitHub [1] with a request for them to resolve this with upstream directly, as that seemed to be the most appropriate course of action. Thanks for reporting the issue. Should I open a sister-issue on libsvm upstream GitHub

Bug#958114: can not use because commonutil can not be imported

2020-04-24 Thread Tiziano Zito
On Fri 24 Apr, 12:24 +0200, Christian Kastner wrote: I have to disagree on that. I'd agree if PyPI were hosting the official version, but this appears to be provided by a third party. This unofficial version already conflicts with upstream, so future conflicts and issues cannot be ruled out.

Bug#958114: can not use because commonutil can not be imported

2020-04-24 Thread Tiziano Zito
On Fri 24 Apr, 12:24 +0200, Christian Kastner wrote: I have to disagree on that. I'd agree if PyPI were hosting the official version, but this appears to be provided by a third party. This unofficial version already conflicts with upstream, so future conflicts and issues cannot be ruled out.

Bug#958114: can not use because commonutil can not be imported

2020-04-24 Thread Tiziano Zito
On Thu 23 Apr, 22:46 +0200, Christian Kastner wrote: Upstream is actually creating a libsvm namespace. When installing libsvm using pip, the package layout is the following: libsvm ├── __init__.py ├── commonutil.py ├── svm.py └── svmutil.py While that would solve the namespace problem, it

Bug#958114: can not use because commonutil can not be imported

2020-04-24 Thread Tiziano Zito
On Thu 23 Apr, 22:46 +0200, Christian Kastner wrote: Upstream is actually creating a libsvm namespace. When installing libsvm using pip, the package layout is the following: libsvm ├── __init__.py ├── commonutil.py ├── svm.py └── svmutil.py While that would solve the namespace problem, it

Bug#958114: can not use because commonutil can not be imported

2020-04-18 Thread Tiziano Zito
Package: python3-libsvm Version: 3.24+ds-3 Severity: important Hi! The libsvm package has changed interface and can not be used anymore. With the python3-libsvm package from sid the following happens: python3 -c 'import svmutil' Traceback (most recent call last): File "", line 1, in File

Bug#958114: can not use because commonutil can not be imported

2020-04-18 Thread Tiziano Zito
Package: python3-libsvm Version: 3.24+ds-3 Severity: important Hi! The libsvm package has changed interface and can not be used anymore. With the python3-libsvm package from sid the following happens: python3 -c 'import svmutil' Traceback (most recent call last): File "", line 1, in File

[ANN] 13ᵗʰ Advanced Scientific Programming in Python in Ghent, Belgium, 31 August—5 September, 2020

2020-02-13 Thread Tiziano Zito
tute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin Germany • Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw Poland Organizers == Head of the organization for ASPP and responsible for the scientific pro

[Numpy-discussion] [ANN] 13ᵗʰ Advanced Scientific Programming in Python in Ghent, Belgium, 31 August—5 September, 2020

2020-02-13 Thread Tiziano Zito
tute for Theoretical Biology, Humboldt-Universität zu Berlin Germany • Tiziano Zito, Department of Psychology, Humboldt-Universität zu Berlin Germany • Zbigniew Jędrzejewski-Szmek, Red Hat Inc., Warsaw Poland Organizers == Head of the organization for ASPP and responsible for the scientific pro

[ANN] 12ᵗʰ Advanced Scientific Programming in Python in Camerino, Italy, 2—7 September, 2019

2019-03-03 Thread Tiziano Zito
ural Reckoning, Imperial College London, UK • Pietro Berkes, NAGRA Kudelski, Lausanne, Switzerland • Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Germany • Stéfan van der Walt, Berkeley Institute for Data Science, UC Berkeley, CA, USA • Tiziano

[Numpy-discussion] [ANN] 12ᵗʰ Advanced Scientific Programming in Python in Camerino, Italy, 2—7 September, 2019

2019-02-28 Thread Tiziano Zito
ural Reckoning, Imperial College London, UK • Pietro Berkes, NAGRA Kudelski, Lausanne, Switzerland • Rike-Benjamin Schuppner, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Germany • Stéfan van der Walt, Berkeley Institute for Data Science, UC Berkeley, CA, USA • Tiziano

Bug#917261: linux-image-4.19.0-1-amd64: /dev/mapper symlink for dm-crypt volume containing / not created on system startup

2018-12-25 Thread Tiziano Zito
Hi! I have the same issue. Not sure the problem is with the kernel package though, because even purging and/or reinstalling linux-image-4.18.0-3 fails (see below). Any suggestion which package may be responsible? The problem started after a dist-upgrade on Dec 24... Thanks! Tiziano #

Bug#917261: linux-image-4.19.0-1-amd64: /dev/mapper symlink for dm-crypt volume containing / not created on system startup

2018-12-25 Thread Tiziano Zito
Hi! I have the same issue. Not sure the problem is with the kernel package though, because even purging and/or reinstalling linux-image-4.18.0-3 fails (see below). Any suggestion which package may be responsible? The problem started after a dist-upgrade on Dec 24... Thanks! Tiziano #

Bug#911768: [pkg-gnupg-maint] Bug#911768: pinentry-gnome3 fails to open a window with 'No Gcr System Prompter available, falling back to curses'

2018-10-25 Thread Tiziano Zito
On Thu 25 Oct, 11:02 -0400, Daniel Kahn Gillmor wrote: On Thu 2018-10-25 13:03:12 +0200, Tiziano Zito wrote: It has nothing to do with pinentry. Given that I have a system with almost identical setup without dbus-user-session where everything works, and given that installing dbus-user-session

Bug#911768: [pkg-gnupg-maint] Bug#911768: pinentry-gnome3 fails to open a window with 'No Gcr System Prompter available, falling back to curses'

2018-10-25 Thread Tiziano Zito
On Thu 25 Oct, 11:02 -0400, Daniel Kahn Gillmor wrote: On Thu 2018-10-25 13:03:12 +0200, Tiziano Zito wrote: It has nothing to do with pinentry. Given that I have a system with almost identical setup without dbus-user-session where everything works, and given that installing dbus-user-session

Bug#911768: [pkg-gnupg-maint] Bug#911768: pinentry-gnome3 fails to open a window with 'No Gcr System Prompter available, falling back to curses'

2018-10-25 Thread Tiziano Zito
Hi Daniel, On Wed 24 Oct, 18:15 -0400, Daniel Kahn Gillmor wrote: Versions of packages pinentry-gnome3 recommends: pn dbus-user-session can you try installing dbus-user-session, then log out and log back in and let me know whether it works in that case? after some hours of debugging, I

Bug#911768: [pkg-gnupg-maint] Bug#911768: pinentry-gnome3 fails to open a window with 'No Gcr System Prompter available, falling back to curses'

2018-10-25 Thread Tiziano Zito
Hi Daniel, On Wed 24 Oct, 18:15 -0400, Daniel Kahn Gillmor wrote: Versions of packages pinentry-gnome3 recommends: pn dbus-user-session can you try installing dbus-user-session, then log out and log back in and let me know whether it works in that case? after some hours of debugging, I

Bug#911768: pinentry-gnome3 fails to open a window with 'No Gcr System Prompter available, falling back to curses'

2018-10-24 Thread Tiziano Zito
Package: pinentry-gnome3 Version: 1.1.0-1+b1 Severity: serious Hi! pinentry-gnome3 (but also pinentry-gtk-2) does not open a window anymore to ask for a passphrase. If run from terminal it shows: No Gcr System Prompter available, falling back to curses OK Pleased to meet you It was working

Bug#911768: pinentry-gnome3 fails to open a window with 'No Gcr System Prompter available, falling back to curses'

2018-10-24 Thread Tiziano Zito
Package: pinentry-gnome3 Version: 1.1.0-1+b1 Severity: serious Hi! pinentry-gnome3 (but also pinentry-gtk-2) does not open a window anymore to ask for a passphrase. If run from terminal it shows: No Gcr System Prompter available, falling back to curses OK Pleased to meet you It was working

Re: Team uploaded python-lzma - any hint how to deal with xz compressed files when using Python3

2018-10-23 Thread Tiziano Zito
On Tue 23 Oct, 20:05 +0200, Andreas Tille wrote: I assumed that the Python3 package would just have been missing in the Debian packaging and thus touched python-lzma. I learned that there are several syntax errors when trying to build with Python3 so this seems to be upstream orphaned code.

Bug#893116: neomutt fails to decode RFC2047-encoded headers

2018-05-08 Thread Tiziano Zito
Package: neomutt Version: 20180323+dfsg.1-1+b1 Followup-For: Bug #893116 The bug has been reported https://github.com/neomutt/neomutt/issues/1189 and meanwhile fixed https://github.com/neomutt/neomutt/pull/1190 upstream, so this bug can be closed when the next neomutt release gets uploaded to

Bug#893116: neomutt fails to decode RFC2047-encoded headers

2018-03-16 Thread Tiziano Zito
Package: neomutt Version: 20180223+dfsg.1-1 Severity: normal Since version 20180223+dfsg.1-1 (previous 20171215+dfsg.1-1 works fine) neomutt fails to properly decode headers encoded following RFC2047. For example, an email with Subject header: Subject: =?UTF-8?Q?Sicherheitsl=C3=BCcke in

[ANN] 10ᵀᴴ Advanced Scientific Programming in Python in Nikiti, Greece, August 28—September 2, 2017

2017-04-28 Thread Tiziano Zito
CNRS, Paris, France • Stéfan van der Walt, Berkeley Institute for Data Science, UC Berkeley, CA USA • Nelle Varoquaux, Berkeley Institute for Data Science, UC Berkeley, CA USA • Tiziano Zito, freelance consultant, Berlin, Germany Organizers == For the German Neuroinformatics Node of the INC

Bug#851941: since version 2:1.19.1-1 xserver-xorg-legacy ignores settings in Xwrapper.config

2017-01-20 Thread Tiziano Zito
Can you try with 2:1.19.1-4 ? There was a regression in the Xorg.wrap permissions. Yes, thank you! With version 2:1.19.1-4 the problem is gone! Thank you again! Tiziano

Bug#851941: since version 2:1.19.1-1 xserver-xorg-legacy ignores settings in Xwrapper.config

2017-01-20 Thread Tiziano Zito
Can you try with 2:1.19.1-4 ? There was a regression in the Xorg.wrap permissions. Yes, thank you! With version 2:1.19.1-4 the problem is gone! Thank you again! Tiziano

Bug#851941: since version 2:1.19.1-1 xserver-xorg-legacy ignores settings in Xwrapper.config

2017-01-19 Thread Tiziano Zito
Package: xserver-xorg-legacy Version: 2:1.19.0-3 Severity: important Starting from version 2:1.19.1-1 the settings in Xwrapper.config are ignored. In a system with systemd, I start the Xserver from /etc/rc.local with: su -l myusername -c 'exec startx -- vt4 >> /tmp/xsession-errors 2>&1' i.e. X

Bug#851941: since version 2:1.19.1-1 xserver-xorg-legacy ignores settings in Xwrapper.config

2017-01-19 Thread Tiziano Zito
Package: xserver-xorg-legacy Version: 2:1.19.0-3 Severity: important Starting from version 2:1.19.1-1 the settings in Xwrapper.config are ignored. In a system with systemd, I start the Xserver from /etc/rc.local with: su -l myusername -c 'exec startx -- vt4 >> /tmp/xsession-errors 2>&1' i.e. X

commit messages and developers discussion

2016-10-31 Thread Tiziano Zito
Dear all, as a long time FVWM user I'm lurking on fvwm-workers@fvwm.org since forever. First of all, thanks to the few devs who are keeping the project up and running: I am grateful for your engagement and I am happy to see that development hasn't stalled :-) Since the move to git and

[ANN] Summer School "Advanced Scientific Programming in Python" in Reading, UK, September 5—11, 2016

2016-04-07 Thread Tiziano Zito
elle Varoquaux, Centre for Computational Biology Mines ParisTech, Institut Curie, U900 INSERM, Paris, France • Tiziano Zito, freelance consultant, Germany Organizers == For the German Neuroinformatics Node of the INCF (G-Node) Germany: • Tiziano Zito, freelance consultant, Germany • Zbig

[Numpy-discussion] [ANN] Summer School "Advanced Scientific Programming in Python" in Reading, UK, September 5—11, 2016

2016-04-07 Thread Tiziano Zito
elle Varoquaux, Centre for Computational Biology Mines ParisTech, Institut Curie, U900 INSERM, Paris, France • Tiziano Zito, freelance consultant, Germany Organizers == For the German Neuroinformatics Node of the INCF (G-Node) Germany: • Tiziano Zito, freelance consultant, Germany • Zbig

Accepted mdp 3.5-1 (source all) into unstable

2016-03-08 Thread Tiziano Zito
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 08 Mar 2016 14:17:15 +0100 Source: mdp Binary: python-mdp python3-mdp Architecture: source all Version: 3.5-1 Distribution: unstable Urgency: medium Maintainer: Tiziano Zito <opossumn...@gmail.com> Changed-By: Tizian

Accepted mdp 3.4-1 (source all) into unstable

2016-03-04 Thread Tiziano Zito
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Fri, 04 Mar 2016 10:35:29 +0100 Source: mdp Binary: python-mdp python3-mdp Architecture: source all Version: 3.4-1 Distribution: unstable Urgency: medium Maintainer: Tiziano Zito <opossumn...@gmail.com> Changed-By: Tizian

Bug#811479: boot fails in "run-init -n ..."

2016-01-20 Thread Tiziano Zito
Hi, Same problem here after upgrading to 0.121. System does not boot anymore and gets stuck at initramfs prompt after "run-init: opening console: No such file or directory" error. The 0.122~a.test packages made my system bootable again too. Like Florent, I had to rescue the system by

Bug#811479: boot fails in "run-init -n ..."

2016-01-20 Thread Tiziano Zito
Hi, Same problem here after upgrading to 0.121. System does not boot anymore and gets stuck at initramfs prompt after "run-init: opening console: No such file or directory" error. The 0.122~a.test packages made my system bootable again too. Like Florent, I had to rescue the system by

Bug#811479: boot fails in "run-init -n ..."

2016-01-20 Thread Tiziano Zito
Hi, Same problem here after upgrading to 0.121. System does not boot anymore and gets stuck at initramfs prompt after "run-init: opening console: No such file or directory" error. The 0.122~a.test packages made my system bootable again too. Like Florent, I had to rescue the system by

[Numpy-discussion] Reminder - Summer School Advanced Scientific Programming in Python in Munich, Germany

2015-03-23 Thread Tiziano Zito
for Theoretical Neuroscience, CNRS, Paris, France • Nelle Varoquaux, Centre for Computational Biology Mines ParisTech, Institut Curie, U900 INSERM, Paris, France • Tiziano Zito, Forschungszentrum Jülich GmbH, Germany Organized by Tiziano Zito (head) and Zbigniew Jędrzejewski-Szmek for the German

Reminder - Summer School Advanced Scientific Programming in Python in Munich, Germany

2015-03-23 Thread Tiziano Zito
for Theoretical Neuroscience, CNRS, Paris, France • Nelle Varoquaux, Centre for Computational Biology Mines ParisTech, Institut Curie, U900 INSERM, Paris, France • Tiziano Zito, Forschungszentrum Jülich GmbH, Germany Organized by Tiziano Zito (head) and Zbigniew Jędrzejewski-Szmek for the German

Re: Bye bye Debian Science

2015-02-05 Thread Tiziano Zito
Hi Sylvestre, Just a quick email to let you know that I am going to quit this team. Thank you for the work you have put in the lapack/blas/atlas packages. Since you have introduced it, I have initiated thillions of fellow scientists to the elegance and power of the chapter Building Optimized

[Numpy-discussion] [ANN] Summer School Advanced Scientific Programming in Python in Munich, Germany

2014-12-17 Thread Tiziano Zito
Technology Consulting GmbH, Germany • Tiziano Zito, Forschungszentrum Jülich GmbH, Germany Organized by Tiziano Zito (head) and Zbigniew Jędrzejewski-Szmek for the German Neuroinformatics Node of the INCF Germany, Christopher Roppelt for the German Center for Vertigo and Balance Disorders (DSGZ

[ANN] Summer School Advanced Scientific Programming in Python in Munich, Germany

2014-12-17 Thread Tiziano Zito
Technology Consulting GmbH, Germany • Tiziano Zito, Forschungszentrum Jülich GmbH, Germany Organized by Tiziano Zito (head) and Zbigniew Jędrzejewski-Szmek for the German Neuroinformatics Node of the INCF Germany, Christopher Roppelt for the German Center for Vertigo and Balance Disorders (DSGZ

Bug#771649: unblock: python-mdp/3.3-2

2014-12-01 Thread Tiziano Zito
a corresponding tests directory to work around + new py.test conftest.py autodiscovery features in python-pytest + version 2.6.3 + * Upload sponsored by Yaroslav Halchenko + + -- Tiziano Zito opossumn...@gmail.com Wed, 12 Nov 2014 15:53:57 +0100 + mdp (3.3-1) unstable; urgency=low * New

Bug#771658: unblock: python3-mdp/3.3-2

2014-12-01 Thread Tiziano Zito
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package python3-mdp This version is the same as of python-mdp in the unblock request #771649. While it does not fix any bug (the FTBFS #768675 is a python2-only bug as as

Bug#771649: unblock: python-mdp/3.3-2

2014-12-01 Thread Tiziano Zito
a corresponding tests directory to work around + new py.test conftest.py autodiscovery features in python-pytest + version 2.6.3 + * Upload sponsored by Yaroslav Halchenko + + -- Tiziano Zito opossumn...@gmail.com Wed, 12 Nov 2014 15:53:57 +0100 + mdp (3.3-1) unstable; urgency=low * New

Bug#771658: unblock: python3-mdp/3.3-2

2014-12-01 Thread Tiziano Zito
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package python3-mdp This version is the same as of python-mdp in the unblock request #771649. While it does not fix any bug (the FTBFS #768675 is a python2-only bug as as

Accepted mdp 3.3-2 (source all) into unstable

2014-11-28 Thread Tiziano Zito
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 12 Nov 2014 15:53:57 +0100 Source: mdp Binary: python-mdp python3-mdp Architecture: source all Version: 3.3-2 Distribution: unstable Urgency: low Maintainer: Tiziano Zito opossumn...@gmail.com Changed-By: Tiziano Zito opossumn

Bug#770171: sshd jail fails when system solely relies on systemd journal for logging

2014-11-19 Thread Tiziano Zito
Package: fail2ban Version: 0.9.1-1 Severity: important Dear Maintainer, when a system is configured to use the systemd journal as the sole logging system, i.e. when none of the packages provided by system-log-daemon are installed, the default sshd jail does not work. When logging in the system

Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-12 Thread Tiziano Zito
Hi Andrey! On Wed 12 Nov, 23:05, Andrey Rahmatullin w...@debian.org wrote: The failing docstring indeed contains U+2013 EN DASH, it is taken from /usr/lib/python2.7/dist-packages/sklearn/feature_extraction/text.py (package python-sklearn). In jessie (0.14.1-3) it says Transform a count matrix

Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-12 Thread Tiziano Zito
Hi Andrey! On Wed 12 Nov, 23:05, Andrey Rahmatullin w...@debian.org wrote: The failing docstring indeed contains U+2013 EN DASH, it is taken from /usr/lib/python2.7/dist-packages/sklearn/feature_extraction/text.py (package python-sklearn). In jessie (0.14.1-3) it says Transform a count matrix

[ANN] Summer School Advanced Scientific Programming in Python in Split, Croatia

2014-02-07 Thread Tiziano Zito
, South Africa • Niko Wilbert, TNG Technology Consulting GmbH, Germany • Tiziano Zito, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Germany Organized by Tiziano Zito (head) and Zbigniew Jędrzejewski-Szmek for the German Neuroinformatics Node of the INCF (Germany), Lana

[Numpy-discussion] [ANN] Summer School Advanced Scientific Programming in Python in Split, Croatia

2014-02-06 Thread Tiziano Zito
, South Africa • Niko Wilbert, TNG Technology Consulting GmbH, Germany • Tiziano Zito, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Germany Organized by Tiziano Zito (head) and Zbigniew Jędrzejewski-Szmek for the German Neuroinformatics Node of the INCF (Germany), Lana

Re: [pymvpa] PyMVPA Growing Nerual Gas implementation

2014-01-24 Thread Tiziano Zito
Hi Tony, you can actually use the MDP GNG implementation directly in PyMVPA using the MDPFlowMapper. An example of how to use MDP within PyMVPA can be found here: http://www.pymvpa.org/examples/mdp_mnist.html HTH, Tiziano On Thu 23 Jan, 15:42, Jiang, Zhiguo zhiguo.ji...@njit.edu wrote: Hi,

Bug#691346: mfi in 9.1

2014-01-20 Thread Tiziano Zito
On Wed 15 Jan, 11:12, Robert Millan r...@debian.org wrote: On Mon, Nov 12, 2012 at 01:56:38PM +0100, Mathieu Simon wrote: G'day Actually FreBSD 9.1 will contain update 'mfi' driver code which largely expands the support for MegaRAID drivers. (confirmed witha 9.1-RC3 media) It might

Bug#691346: mfi in 9.1

2014-01-20 Thread Tiziano Zito
On Wed 15 Jan, 11:12, Robert Millan r...@debian.org wrote: On Mon, Nov 12, 2012 at 01:56:38PM +0100, Mathieu Simon wrote: G'day Actually FreBSD 9.1 will contain update 'mfi' driver code which largely expands the support for MegaRAID drivers. (confirmed witha 9.1-RC3 media) It might

Re: [Scikit-learn-general] Nonn-ASCII in source files

2013-08-28 Thread Tiziano Zito
UTF-8 characters are not very pleasant to work with, as only a fraction of the world knows how to type them (that fraction depends on the corresponding character). I notice that they have creeped in a bunch of our files. I'll try to remove them (if I find time). I believe that we should

[Numpy-discussion] EuroSciPy 2013: deadline extension 5 May 2013!

2013-04-29 Thread Tiziano Zito
2013 is the annual European conference for scientists using Python. It will be held August 21-25 2013 in Brussels, Belgium. Any other questions should be addressed exclusively to euroscipy-...@python.org -- Tiziano Zito (Program Chair) ___ NumPy

[Numpy-discussion] [ANN] Summer School Advanced Scientific Programming in Python in Zürich, Switzerland

2013-01-31 Thread Tiziano Zito
, Berlin Institute of Technology and Bernstein Focus Neurotechnology, Germany - Niko Wilbert, TNG Technology Consulting GmbH, Germany - Tiziano Zito, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Germany Organized by Nicola Chiapolini and colleagues of the Physik

Accepted mdp 3.3+git6-g7bbd889-1 (source all)

2012-11-29 Thread Tiziano Zito
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Wed, 21 Nov 2012 10:19:15 +0100 Source: mdp Binary: python-mdp python3-mdp Architecture: source all Version: 3.3+git6-g7bbd889-1 Distribution: experimental Urgency: low Maintainer: Tiziano Zito opossumn...@gmail.com Changed

Re: LSI MegaRAID

2012-11-01 Thread Tiziano Zito
Hi! Considering this seems to affect a very limited number of hardware I don't think it actually classifies as critical for kfreebsd after all. I don't know how many SystemX servers IBM has sold in the last 6 months, but most of them mount this or other LSI cards based on the same LSI

Bug#691754: LSI MegaRAID

2012-11-01 Thread Tiziano Zito
Hi! Considering this seems to affect a very limited number of hardware I don't think it actually classifies as critical for kfreebsd after all. I don't know how many SystemX servers IBM has sold in the last 6 months, but most of them mount this or other LSI cards based on the same LSI

Bug#691346: kfreebsd-amd64 fails to install on LSI MegaRAID SAS 2208

2012-10-24 Thread Tiziano Zito
Package: installation-reports Severity: critical Tags: d-i -- Package-specific info: Boot method: CD Image version: debian-wheezy-DI-b3-kfreebsd-amd64-netinst.iso Date: 201210241200 Machine: IBM System x3650 M4 Partitions: no partitions Base System Installation Checklist: [O] = OK, [E] = Error

Bug#691346: kfreebsd-amd64 fails to install on LSI MegaRAID SAS 2208

2012-10-24 Thread Tiziano Zito
Package: installation-reports Severity: critical Tags: d-i -- Package-specific info: Boot method: CD Image version: debian-wheezy-DI-b3-kfreebsd-amd64-netinst.iso Date: 201210241200 Machine: IBM System x3650 M4 Partitions: no partitions Base System Installation Checklist: [O] = OK, [E] = Error

Bug#691346: kfreebsd-amd64 fails to install on LSI MegaRAID SAS 2208

2012-10-24 Thread Tiziano Zito
Package: installation-reports Severity: critical Tags: d-i -- Package-specific info: Boot method: CD Image version: debian-wheezy-DI-b3-kfreebsd-amd64-netinst.iso Date: 201210241200 Machine: IBM System x3650 M4 Partitions: no partitions Base System Installation Checklist: [O] = OK, [E] = Error

[Numpy-discussion] [ANN] MDP-3.3 released!

2012-10-04 Thread Tiziano Zito
, Pietro Berkes Zbigniew Jędrzejewski-Szmek Rike-Benjamin Schuppner Niko Wilbert Tiziano Zito ___ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion

Bug#689606: unblock: mdp/3.3-1

2012-10-04 Thread Tiziano Zito
and Ubuntu releases (tested on the NeuroDebian buildbots). This gives me enough confidence to ask for the package to be released with wheezy. Please allow mdp/3.3-1 in testing. Thanks, Tiziano Zito unblock mdp/3.3-1 -- System Information: Debian Release: wheezy/sid APT prefers unstable APT

[ANN] MDP-3.3 released!

2012-10-04 Thread Tiziano Zito
, Pietro Berkes Zbigniew Jędrzejewski-Szmek Rike-Benjamin Schuppner Niko Wilbert Tiziano Zito -- http://mail.python.org/mailman/listinfo/python-announce-list Support the Python Software Foundation: http://www.python.org/psf/donations/

Bug#689606: unblock: mdp/3.3-1

2012-10-04 Thread Tiziano Zito
and Ubuntu releases (tested on the NeuroDebian buildbots). This gives me enough confidence to ask for the package to be released with wheezy. Please allow mdp/3.3-1 in testing. Thanks, Tiziano Zito unblock mdp/3.3-1 -- System Information: Debian Release: wheezy/sid APT prefers unstable APT

Accepted mdp 3.3-1 (source all)

2012-09-30 Thread Tiziano Zito
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Format: 1.8 Date: Wed, 26 Sep 2012 10:28:55 +0200 Source: mdp Binary: python-mdp python3-mdp Architecture: source all Version: 3.3-1 Distribution: unstable Urgency: low Maintainer: Tiziano Zito opossumn...@gmail.com Changed-By: Tiziano Zito opossumn

Bug#689028: some sklearn wrappers fail when python-sklearn 0.11 is installed

2012-09-28 Thread Tiziano Zito
Package: python-mdp Version: 3.2+git78-g7db3c50-3 Severity: important Tags: upstream Reported upstream: http://sourceforge.net/mailarchive/message.php?msg_id=29700933 and https://github.com/mdp-toolkit/mdp-toolkit/issues/2 -- System Information: Debian Release: wheezy/sid APT prefers unstable

Bug#689027: MDP fails to import if pp server can not start

2012-09-28 Thread Tiziano Zito
Package: python-mdp Version: 3.2+git78-g7db3c50-3 Severity: grave Tags: upstream As reported by Yaroslav Halchenko, mdp fails to import if python-pp is installed but pp server fails to start. This can happen if the machine is low on memory for example. The bug is grave because mdp FTBFS ona

Bug#689027: MDP fails to import if pp server can not start

2012-09-28 Thread Tiziano Zito
Package: python-mdp Version: 3.2+git78-g7db3c50-3 Severity: grave Tags: upstream As reported by Yaroslav Halchenko, mdp fails to import if python-pp is installed but pp server fails to start. This can happen if the machine is low on memory for example. The bug is grave because mdp FTBFS ona

Bug#687408: mdp: FTBFS: test failed

2012-09-23 Thread Tiziano Zito
Hi, those tests sometimes fail because there is some randomness involved. They test the convergence of some algorithms, and sometimes the get stuck in local optima. The fix is to test the package during build with a fixed random seed, so that we only get real failing tests: if the fixed random

Bug#687408: mdp: FTBFS: test failed

2012-09-23 Thread Tiziano Zito
Hi, those tests sometimes fail because there is some randomness involved. They test the convergence of some algorithms, and sometimes the get stuck in local optima. The fix is to test the package during build with a fixed random seed, so that we only get real failing tests: if the fixed random

Bug#684463: condor fails to install if condor user already exists

2012-08-22 Thread Tiziano Zito
Hi Michael, any chance that you can upload somewhere (maybe on nd archives) a backport for squeeze? All production systems I have right now run squeeze. Thanks, Tiziano On Tue 21 Aug, 21:04, Michael Hanke wrote: On Tue, Aug 14, 2012 at 10:30:00AM +0200, Tiziano Zito wrote: Thanks, it's

Bug#684463: condor fails to install if condor user already exists

2012-08-22 Thread Tiziano Zito
! Tiziano On Wed 22 Aug, 13:47, Michael Hanke wrote: On Wed, Aug 22, 2012 at 08:38:15AM +0200, Tiziano Zito wrote: Hi Michael, any chance that you can upload somewhere (maybe on nd archives) a backport for squeeze? All production systems I have right now run squeeze. Binary packages

Bug#684463: condor fails to install if condor user already exists

2012-08-14 Thread Tiziano Zito
diff --git a/debian/condor.postinst b/debian/condor.postinst index 91ac8a5..0156b7c 100755 --- a/debian/condor.postinst +++ b/debian/condor.postinst @@ -164,8 +164,24 @@ case $1 in configure) # according to http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=621833#119

Bug#684463: [Neurodebian-devel] condor fails to install if condor user already exists

2012-08-13 Thread Tiziano Zito
Hi! On Sat 11 Aug, 20:59, Michael Hanke wrote: Regarding the actual bug. This issue came up in the early days of this packaging. It essentially happens mostly for people upgrading from existing Condor deployments. While I can't say much about the necessity to have a Condor user in LDAP. I'm

Bug#684463: [Neurodebian-devel] condor fails to install if condor user already exists

2012-08-13 Thread Tiziano Zito
severity 684463 normal thank you! However, it would be much nicer if we could find a way to deal with this scenario without having to use debconf. Maybe we could try to check the validity of the requirements: there is a 'condor' user and it can't be used to log in. If there is a reliable

Bug#684463: condor fails to install if condor user already exists

2012-08-10 Thread Tiziano Zito
Package: condor Version: 7.8.1~dfsg.1-1~nd12.04+1 Severity: grave Justification: renders package unusable Hi! when I try to install condor on a machine where the condor user already exists (either because the machine uses LDAP authentication and condor user is in LDAP or because I am just

Bug#684463: condor fails to install if condor user already exists

2012-08-10 Thread Tiziano Zito
Package: condor Version: 7.8.1~dfsg.1-1~nd12.04+1 Where does this version come from? Debian has 7.8.1~dfsg.1-2 in Wheezy and Sid. It seems to come from http://neuro.debian.net and to be a backport of 7.8.1~dfsg.1-1. Sorry for not mentioning it, I quickly checked on two different

Bug#684463: condor fails to install if condor user already exists

2012-08-10 Thread Tiziano Zito
Package: condor Version: 7.8.1~dfsg.1-1~nd12.04+1 Severity: grave Justification: renders package unusable Hi! when I try to install condor on a machine where the condor user already exists (either because the machine uses LDAP authentication and condor user is in LDAP or because I am just

Bug#684463: condor fails to install if condor user already exists

2012-08-10 Thread Tiziano Zito
Package: condor Version: 7.8.1~dfsg.1-1~nd12.04+1 Where does this version come from? Debian has 7.8.1~dfsg.1-2 in Wheezy and Sid. It seems to come from http://neuro.debian.net and to be a backport of 7.8.1~dfsg.1-1. Sorry for not mentioning it, I quickly checked on two different

Re: [Scikit-learn-general] reproducing test failures

2012-05-09 Thread Tiziano Zito
a bit off-topic, but tests ... but @seed'ing every test is somewhat a burden (probably a wise solution would be to come with with a nose plugin or smth to seed RNG before running every test) I am surprised nose does not offer that. py.test has it built-in, you just need to define globally the

Re: [Scikit-learn-general] reproducing test failures

2012-05-08 Thread Tiziano Zito
is there a point where generic numpy.random gets explicitly seeded upon sklearn import? No, and I don't think that this is desirable: it would be a weird side effect of importing the scikit. It might be interesting to seed the global RNG in the tests, but I have found such an approach

Re: [pymvpa] PyMVPA for Python 3 -- second report

2012-04-22 Thread Tiziano Zito
was it painful? not really, just a bit of vi gymnastics ;) ciao, tiziano ___ Pkg-ExpPsy-PyMVPA mailing list Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa

Re: [pymvpa] PyMVPA for Python 3 -- second report

2012-04-21 Thread Tiziano Zito
may be some skype/shared screen sprintee next week over remaining issues etc? yes, if michael is around we could meet in berlin or magdeburg and have get you on skype. There is a bulk of changes in some guys feature branches and if we do not merge now, later it might not be as easy ;) I

Re: [pymvpa] PyMVPA for Python 3 -- second report

2012-04-21 Thread Tiziano Zito
cool -- you can consider me now a contributor to this little project ;-) I have sent a pull request against your branch with few changes, please review. I merged your pull request, thank you :) Also it might be nice to markup those commits which deal with python3 compatibility as PY3 (e.g.

[pymvpa] PyMVPA for Python 3 -- second report

2012-04-20 Thread Tiziano Zito
hi all, with my today's efforts I got down to 13 errors and 15 failures out of 284 tests, so it's getting better :) on the same branch the same set of unittests passes without errors or failures with python 2.7, so I assume I did not break anything important. I attach here the error logs in

Re: [pymvpa] PyMVPA for Python 3

2012-04-19 Thread Tiziano Zito
if you push your work somewhere (I don't see your clone at https://github.com/PyMVPA/PyMVPA/network) we will add it to daily testing I don't know why you don't see it, but I do have a fork on github: https://github.com/otizonaizit/PyMVPA/ but please, slow down, this is very much work in

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