[Bioc-devel] fixing deltaCaptureC

2024-03-27 Thread Michael Shapiro
My package deltaCaptureC is suddenly having build problems, specifically a problem building the vignette. It fails when attempting to display a ggplot object in the vignette, and this seems to be due to changes in ggplot. I've updated the .rda files for the plots and the vignette now builds

Re: [Bioc-devel] Commit access for additional developer on missMethyl package

2024-03-27 Thread Kern, Lori via Bioc-devel
I'll be in touch with Calandra privately to set up a BiocCredentials account. Once that is established we can proceed with this request Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets

Re: [Bioc-devel] about deprecate package DNABarcode

2024-03-27 Thread Sun Wenjie
Hi Pedro, Tilo has responded and is currently updating the DNABarcode package. Best, Wenjie From: Pedro Sánchez Sánchez Sent: Wednesday, March 20, 2024 1:58 PM To: Kern, Lori Cc: Sun Wenjie; bioc-devel@r-project.org Subject: Re: [Bioc-devel] about

Re: [Bioc-devel] about deprecate package DNABarcode

2024-03-27 Thread Kern, Lori via Bioc-devel
You'll have to remind them to request un-deprecation here or on the emails they were reached out to. We will not un-deprecate until the package is fixed and they request the package not be deprecated to prove they have an active email. Lori Shepherd - Kern Bioconductor Core Team Roswell

Re: [Bioc-devel] about deprecate package DNABarcode

2024-03-27 Thread Pedro Sánchez Sánchez
Hi Sun, Yes! I was about to write the same to you hahaha It's great news! Best, Pedro On Wed, Mar 27, 2024, 15:18 Sun Wenjie wrote: > Hi Pedro, > > Tilo has responded and is currently updating the DNABarcode package. > > Best, > Wenjie > > > From:

Re: [Bioc-devel] fixing deltaCaptureC

2024-03-27 Thread Jennifer Wokaty
Hi Michael, I see that it is passing for 3.18. The email might have been for devel, which is still failing. You should cherry-pick the commit and bump the version for the devel branch: