Re: [R-pkg-devel] new maintainer for CRAN package XML

Dear Uwe Ligges, On Mon, 22 Jan 2024 15:50:44 +0100 Uwe Ligges wrote: > So we are looking for a person volunteering to take over 'XML'. > Please let us know if you are interested. Unless someone else has been discussing this with CRAN in private or had a package depending on XML and was

Re: [Rd] Advice debugging M1Mac check errors

On Sun, 4 Feb 2024 20:41:51 +0100 Holger Hoefling wrote: > I wanted to ask if people have good advice on how to debug M1Mac > package check errors when you don´t have a Mac? Apologies for not answering the question you asked, but is this about hdf5r and problems printing R_xlen_t [*] that

Re: [R-pkg-devel] Bioconductor reverse dependency checks for a CRAN package

Thank you Georgi Boshnakov, Ben Bolker, and Diego Hernangómez Herrero for introducing me to `revdepcheck`! On Tue, 30 Jan 2024 12:38:57 -0500 Ben Bolker wrote: > I have had a few issues with it > but overall it's > been very helpful. Indeed

Re: [R-pkg-devel] Bioconductor reverse dependency checks for a CRAN package

On Tue, 30 Jan 2024 16:24:40 + Martin Morgan wrote: > BiocManager (the recommended way to install Bioconductor packages) at > the end of the day does essentially install.packages(repos = > BiocManager::repositories()), ensuring that the right versions of > Bioconductor packages are installed

Re: [R-pkg-devel] Bioconductor reverse dependency checks for a CRAN package

Dear Dirk, Thank you very much for your help here and over on GitHub! I have finally managed to get the reverse dependency checks working. It took some additional disk space and a few more system dependencies. If not for r2u, I would have been stuck for much longer. I really appreciate the work

Re: [Rd] [Feature Request] Hide API Key in download.file() / R's libcurl

Apologies for the typo in my original email. I meant “quiet=1” and it was working. The log was typed but not copied so that was why there was a typo. But as stated in the reasoning - it hides all the output, so also other useful information like where the lib is installed, compile details etc.

Re: [Rd] [Feature Request] Hide API Key in download.file() / R's libcurl

> Simon Urbanek > on Sun, 4 Feb 2024 10:33:34 +1300 writes: > Any reason why you didn't use quiet=TRUE to suppress that > output? He wrote 'quite' instead of 'quiet' {see cited below '1. quite=1'} and probably never tried the correct spelling ... > There is no

Re: [Bioc-devel] Incorrect warning about failing package built

Hi again, I tried to find the problem by (un)installing any (pip) global installations of pandas, leidenalg, umap-learn, igraph and python-igraph, and then installing them with biocbuild's pip, i.e. non-root user, via reticulate but the error persists! Then I tried: