Re: [R] how to read this data file into R?

2010-02-03 Thread Barry Rowlingson
On Tue, Feb 2, 2010 at 11:40 PM, David Winsemius dwinsem...@comcast.net wrote: The real solution is to grab the miscreant sender by the throat , er,  tactfully discuss with your valued customer ,,, and shake out a machine readable form that has all of one row in a row. Indeed. But you might

[R] Interactively editing point labels in a graph

2010-02-03 Thread trece por ciento
Dear experts, I would like to be able to interactively (if possible, with mouse and clik) edit point labels in graphs, particularly in multivariate graphs, such as the biplots you get after a correspondence analysis (with, for example, package ca), where labels tend to overlap. The graph aspect

[R] sqlUpdate RODBC

2010-02-03 Thread koj
Dear all, I using R version 2.9.0 on Windows XP and want to insert data from a data frame in R into a oracle database via sqlUpdate with the package RODBC. My example is the following: TEST0-data.frame(NR=c(1,2,600),NAME=c(JK,TR,AR), DATUM=c(2009-01-01,2010-01-02,2010-06-09)) If I create the

Re: [R] What are Type II or III contrast? (contrast() in contrast package)

2010-02-03 Thread Emmanuel Charpentier
Le mercredi 03 février 2010 à 00:01 -0500, David Winsemius a écrit : On Feb 2, 2010, at 11:38 PM, Peng Yu wrote: ?contrast in the contrast package gives me the following description. However, I have no idea what Type II and III contrasts are. Could somebody explain it to me? And what does

[R] I need your help

2010-02-03 Thread Lesong Tsai
hello, I have to do some work about information. and I want to do it with R software. The main problem is how to plot using R language. Could you give me help? I need some material about it. if you have some good material ,Could ihave i ? my email is cailix...@genomics.org.cn THX. -- View this

Re: [R] Memory Problem

2010-02-03 Thread Jim Lemon
On 02/02/2010 09:33 PM, Meenakshi wrote: Hi, When I run the repeat loop in R for large dataset, I got Memory problem. How can I solve these problem. 1) Wait 2^m years, where m is the power of 2 that approximates the multiple of your current amount of RAM that would accommodate your problem

Re: [R] 3D plot of following data

2010-02-03 Thread Jim Lemon
On 02/02/2010 11:01 PM, walter.dju...@chello.at wrote: Hello R-experts, I am having difficulties with 3D plotting (i.e. the evolution of various forward curves through time). I have two comma seperated files both ordered by date (in the first column) one containing contracts (meaning forward

Re: [R] tapply for function taking of 1 argument?

2010-02-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 02.02.2010 22:16:06: 'fraid not :-(( tapply( data, groups, weighted.mean, weights) tapply(seq(along=lll), rrr, function(i, x, w) weighted.mean(x[i], w[i]), x=lll, w=ttt) If you want to subset more than one thing, subset the index

Re: [R] lattice key inside panel

2010-02-03 Thread Deepayan Sarkar
On Wed, Feb 3, 2010 at 10:50 AM, Santosh santosh2...@gmail.com wrote: Dear R-experts.. I am trying to generate legend inside panels of lattice barplots.. Following is a sample dataset..   Sno DN  EP Y1 Y2 1    1 D1 A20 19 19 2    1 D1 A50  8  9 3    1 D1 A70  3  4 4    2 D2 A20 22 22 5  

Re: [R] create an object in a loop (v3)

2010-02-03 Thread Ivan Calandra
Hi! Looks like get() doesn't work. Here is what I do and what I get (still in the loop): names(get(paste(names(file)[3], name.num, sep=_)))- levels(factor(file[[3]])) Error in names(get(paste(names(file)[3], name.num, sep = _)))- levels(factor(file[[3]])) : could not find function get-

Re: [R] Subset and plot

2010-02-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 03.02.2010 02:54:46: Let's look at your data frame: str(daily.sub1) 'data.frame': 9 obs. of 4 variables: $ Trial: Factor w/ 1 level 2: 1 1 1 1 1 1 1 1 1 $ Tanks: Factor w/ 3 levels a4,c4,h4: 1 1 1 2 2 2 3 3 3 $ Day : Factor w/ 9 levels

Re: [R] merging columns

2010-02-03 Thread Matthew Dowle
Yes. data.df[,wcol,drop=FALSE] For an explanation of drop see ?[.data.frame Chuck White chuckwhi...@charter.net wrote in message news:20100202212800.o8xbu.681696.r...@mp11... Additional clarification: the problem only comes when you have one column selected from the original dataframe. You

[R] Odp: I need your help

2010-02-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 03.02.2010 09:19:59: hello, I have to do some work about information. and I want to do it with R software. If you have working connection to internet try to search http://www.r-project.org/index.html documentation section (either for manuals

[R] plm package index

2010-02-03 Thread Bunny, lautloscrew.com
Dear all, i just wonder if there´s a way to use a two column time index field in plm package. the manual says the following concerning data indexing: a character vector of length two containing the names of the individual and the time index, What would y´all do with a quarterly dataset

Re: [R] Build a matrix from another matrix by specifying the indexes

2010-02-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 02.02.2010 21:32:16: ke te pehea koe Peter? I don't see how I could do this with a merge to be honest... mat-matrix(sample(letters[1:3], 24, replace=T),6,4) mat [,1] [,2] [,3] [,4] [1,] b c b c [2,] b a a c [3,] c b c a [4,] b

[R] color blending and transparency

2010-02-03 Thread bluecuttlefish
I am using ggplot and posted this question at that helplist. It was suggested that I try a more general R-help list for a possible solution to this problem. Within ggplot, I am using geom_area with red and blue and expect where they overlap should be purple. But instead, it's dark red. Playing

Re: [R] Interactively editing point labels in a graph

2010-02-03 Thread Liviu Andronic
Hello On 2/3/10, trece por ciento el13porcie...@yahoo.com wrote: Dear experts, I would like to be able to interactively (if possible, with mouse and clik) edit point labels in graphs, Try playwith. Liviu particularly in multivariate graphs, such as the biplots you get after a

[R] create an object in a loop (v4)

2010-02-03 Thread Ivan Calandra
Hi everybody, I have just thought that it might help if I would provide a sample data set. I have attached it as a txt file (tab separated). Here is the modified code to fit this data set. library(WRS) file - read.table(file=file.choose(), header=T, sep=\t) seq.num- c(4,5)#column

Re: [R] color blending and transparency

2010-02-03 Thread Jim Lemon
On 02/03/2010 08:43 PM, bluecuttlefish wrote: I am using ggplot and posted this question at that helplist. It was suggested that I try a more general R-help list for a possible solution to this problem. Within ggplot, I am using geom_area with red and blue and expect where they overlap should

[R] contour function: changing colour according to different levels

2010-02-03 Thread karine heerah
Hi everybody, I am using the contour function to draw isobares. And i would like to to bold contours for an interval of 500m and weak contour for an interval of 100m. Can someone help me with this? Thanks a lot Karine

Re: [R] contour function: changing colour according to different levels

2010-02-03 Thread Paul Hiemstra
karine heerah wrote: Hi everybody, I am using the contour function to draw isobares. And i would like to to bold contours for an interval of 500m and weak contour for an interval of 100m. Can someone help me with this? Thanks a lot Karine

[R] Boundary problem

2010-02-03 Thread Martin Kappler
Hello, I have to vectors high and low on a time scale as follows time - 1:5 low - c(1, 2, 3, 4, 5) high - c(5, 4, 3, 4, 4) Now I'm searching for an elegant solution to know if a data point in time is inside the boundaries but not only on the predefined time points but continuous (e.g. time=2.5).

Re: [R] sqlUpdate RODBC

2010-02-03 Thread koj
Update - The first problem is solved: sqlQuery(channel, create table TEST3 (NR NUMBER, NAME VARCHAR2(55),TAG DATE)) -- View this message in context: http://n4.nabble.com/sqlUpdate-RODBC-tp1460867p1460899.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] Reading these datasets

2010-02-03 Thread Sarah Goslee
Amy, It would help if you told us what you did, and what warnings you received. For instance, what happens with mydata - read.table(triazines.txt, sep=\t, header=TRUE) You probably also need to delete off those initial blank lines, or use skip=3 in the previous statement (or however many there

Re: [R] Reading these datasets

2010-02-03 Thread Jim Lemon
On 02/03/2010 10:39 PM, Amy Hessen wrote: Hi, I receive too many warnings when I try to read the attached datasets. Could you please tell me where the problem in them? Hi Amy, triazines-read.table(triazines.txt,header=TRUE) pyrim-read.table(pyrim.txt,header=TRUE) Both work fine for me.

[R] How to change output 'csv' file

2010-02-03 Thread Amelia Livington
Dear R helpers   After executing the R code, where the last few lines of the code are something like given below.     ## Part of my R code     n = 20   .   final_output = data.frame(Numbers = numbers, ABC = data1, XYZ = data2, PQR = data3)  

Re: [R] Boundary problem

2010-02-03 Thread David Winsemius
On Feb 3, 2010, at 6:25 AM, Martin Kappler wrote: Hello, I have to vectors high and low on a time scale as follows time - 1:5 low - c(1, 2, 3, 4, 5) high - c(5, 4, 3, 4, 4) Now I'm searching for an elegant solution to know if a data point in time is inside the boundaries but not only on

[R] About Markov Random Filed

2010-02-03 Thread 陳明宏
Hello!! Does there any packages can simulation data from Markov Random Field? Thanks much Ming Hung Chen [[alternative HTML version deleted]]

Re: [R] How to change output 'csv' file

2010-02-03 Thread David Winsemius
On Feb 3, 2010, at 7:09 AM, Amelia Livington wrote: Dear R helpers After executing the R code, where the last few lines of the code are something like given below. ## Part of my R code n = 20 . final_output = data.frame(Numbers = numbers, ABC = data1, XYZ = data2,

Re: [R] About Markov Random Filed

2010-02-03 Thread David Winsemius
On Feb 3, 2010, at 7:50 AM, 陳明宏 wrote: Hello!! Does there any packages can simulation data from Markov Random Field? Ming Hung Chen, meet the searching function. The answer appeared in the 8 hits. You should search first, post second. RSiteSearch(Markov Random Field) --

Re: [R] hvcluster() with distance method from vegdist(), package = vegan

2010-02-03 Thread Jari Oksanen
Kay Cichini Kay.Cichini at uibk.ac.at writes: hello, i'd be happy if someone could provide help with the following problem: i have a dist.matrix that comes from vegdist() function of the vegan package. the used method = horn is not accepted as argument in

Re: [R] How to change output 'csv' file

2010-02-03 Thread Dennis Murphy
Hi: You can also use the melt() function in the reshape package: using a small snippet of your data as a test case, library(reshape) df Scenario Numbers ABC XYZ PQR 1 Sc_1 1 22 18.0 6 2 Sc_2 2 24 16.5 11 melt(df, id = c('Scenario', 'Numbers')) Scenario Numbers

Re: [R] create an object in a loop (v4)

2010-02-03 Thread jim holtman
For adding the 'names', put the data in a temporary first: for(i in 1:length(seq.num)) { k- seq.num[i] name.num- names(file)[k] temp - fac2list(file[,k], file[3]) names(temp) - levels(factor(file[[3]])) assign(paste(names(file)[3], name.num, sep=_), temp) }

[R] to convert a character string in time

2010-02-03 Thread karine heerah
hi, I have my data time expressed in character string exple 5:20 (hour:min) and i want to convert these in times recognized by R. I have tried the POSIXct function: balise07$Hour - as.POSXIct(balise07$Hour) but it didn't work. Do you know why? Do you know how i can convert my

Re: [R] create an object in a loop (v4)

2010-02-03 Thread Ivan Calandra
Great, thanks a lot! But I feel stupid... I didn't think about that easy solution. I wanted to change the names after... Anyway, it now works! Regards, Ivan Le 2/3/2010 14:22, jim holtman a écrit : For adding the 'names', put the data in a temporary first: for(i in 1:length(seq.num)) {

[R] FW: to convert a character string in time

2010-02-03 Thread karine heerah
hi, I have my data time expressed in character string exple 5:20 (hour:min) and i want to convert these in times recognized by R. I have tried the POSIXct function: balise07$Hour - as.POSIXct(balise07$Hour) but it didn't work. Do you know why? Do you know how i can

Re: [R] pvclust() with distance method from vegdist(), package = vegan

2010-02-03 Thread Kay Cichini
thank you for the information. would be great to have the possibility to check significance of clusters coming from other distance-measures, too - but i'll be satisified with what pvclust() can do. yours, kay -- View this message in context:

Re: [R] color blending and transparency

2010-02-03 Thread baptiste auguie
Hi, Adding two semi-transparent colours results in non-intuitive colour mixing (a mystery for me anyway). Is it additive (light), substractive (paint), or something else? Consider the following example, depending on the order of the two layers the overlap region is either purple or dark red. I

Re: [R] color blending and transparency

2010-02-03 Thread Ken Knoblauch
baptiste auguie baptiste.auguie at googlemail.com writes: Adding two semi-transparent colours results in non-intuitive colour mixing (a mystery for me anyway). Is it additive (light), substractive (paint), or something else? Consider the following example, depending on the order of the two

[R] group factor levels

2010-02-03 Thread baptiste auguie
Dear list, I cannot find an elegant solution to this problem. I have a factor f containing several levels (5) and I wish to create a new factor of the same length with fewer levels (2). This new factor should therefore group together some levels of the original data. Ideally this grouping would

[R] Positioning the y label in scatterplot3d

2010-02-03 Thread RICHARD PITMAN
Is there a way of repositioning the y label in scatterplot3d so that it is parallel with the y axis? Many thanks Richard __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] to convert a character string in time

2010-02-03 Thread jim holtman
Try this: as.POSIXct(5:30, format=%H:%M) [1] 2010-02-03 05:30:00 EST On Wed, Feb 3, 2010 at 8:27 AM, karine heerah karine.hee...@hotmail.fr wrote: hi, I have my data time expressed in character string exple 5:20 (hour:min) and i want to convert these in times recognized by R. I have

[R] Odp: group factor levels

2010-02-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 03.02.2010 14:52:02: Dear list, I cannot find an elegant solution to this problem. I have a factor f containing several levels (5) and I wish to create a new factor of the same length with fewer levels (2). This new factor should therefore group

Re: [R] Positioning the y label in scatterplot3d

2010-02-03 Thread Uwe Ligges
On 03.02.2010 15:02, RICHARD PITMAN wrote: Is there a way of repositioning the y label in scatterplot3d so that it is parallel with the y axis? Short answer: No. Long answer: You could hack the code and add some angle argument to the text() calls that label the y axis, but it is hard to

Re: [R] Positioning the y label in scatterplot3d

2010-02-03 Thread RICHARD PITMAN
Thanks Uwe, much appreciated Regards Richard --- On Wed, 3/2/10, Uwe Ligges lig...@statistik.tu-dortmund.de wrote: From: Uwe Ligges lig...@statistik.tu-dortmund.de Subject: Re: [R] Positioning the y label in scatterplot3d To: RICHARD PITMAN richard.pitm...@btopenworld.com Cc:

Re: [R] color blending and transparency

2010-02-03 Thread Duncan Murdoch
On 03/02/2010 8:50 AM, Ken Knoblauch wrote: baptiste auguie baptiste.auguie at googlemail.com writes: Adding two semi-transparent colours results in non-intuitive colour mixing (a mystery for me anyway). Is it additive (light), substractive (paint), or something else? Consider the following

Re: [R] group factor levels

2010-02-03 Thread baptiste auguie
As always the question seems silly after you've learned the answer! Thanks a lot, baptiste On 3 February 2010 15:06, Petr PIKAL petr.pi...@precheza.cz wrote: # order levels f.t-factor(f, levels=disorder) # change levels levels(f.t) - new.lev all.equal(f.t,f2) [1] TRUE Regards Petr

[R] Package plm heterogenous slopes

2010-02-03 Thread Otto Kässi
Dear r-helpers, I am working with plm package. I am trying to fit a fixed effects (or a 'within') model of the form y_it = a_i + b_i*t + e_it, i.e. a model with an individual-specific intercept and an individual- specific slope. Does plm support this directly? Thanks in advance! Otto Kassi

Re: [R] typo in contrast package's vignettes

2010-02-03 Thread Peng Yu
On Tue, Feb 2, 2010 at 11:22 PM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 12:20 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:14 PM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 12:11 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:04 PM, David

Re: [R] to convert a character string in time

2010-02-03 Thread Gabor Grothendieck
Try this (and see R News 4/1): library(chron) tt - times(paste(5:20, 00, sep = :)); tt [1] 05:20:00 tt + 12/24 # add 12 hours [1] 17:20:00 On Wed, Feb 3, 2010 at 8:27 AM, karine heerah karine.hee...@hotmail.fr wrote: hi, I have my data time expressed in character string exple 5:20

Re: [R] color blending and transparency

2010-02-03 Thread baptiste auguie
That makes perfect sense, thank you, except that I'm not sure where the white comes from when I set the background to transparent? png(testingOrder.png, bg = transparent) plot.new() par(bg=transparent) rect(0.3, 0.5, 1, 1, col=rgb(1, 0, 0, alpha=0.5)) rect(0, 0.5, 0.7, 1, col=rgb(0, 0, 1,

Re: [R] typo in contrast package's vignettes

2010-02-03 Thread David Winsemius
On Feb 3, 2010, at 9:28 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:22 PM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 12:20 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:14 PM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 12:11 AM, Peng Yu

Re: [R] Error with R CMD check - Packages required but not available:

2010-02-03 Thread Uwe Ligges
On 02.02.2010 22:52, Reena Bansal wrote: Apologies in advance if this is not the right email to post this question. I successfully created my first R package myPackage1. Now I want to create another R package myPackage2 which requires functions from myPackage1. However when I try R CMD check

Re: [R] how to read this data file into R?

2010-02-03 Thread Felipe Carrillo
That's strange because I was able to read the file into R just fine --- On Tue, 2/2/10, David Winsemius dwinsem...@comcast.net wrote: From: David Winsemius dwinsem...@comcast.net Subject: Re: [R] how to read this data file into R? To: Felipe Carrillo mazatlanmex...@yahoo.com Cc:

[R] diagnostic plots

2010-02-03 Thread Trafim Vanishek
Dear all, does anybody ever encountered the problem with diagnostic plots? x-rnorm(100) y-rnorm(100) plot(lm(x~y)) It gives the following message Waiting to confirm page change... and nothing happens. Thanks a lot! [[alternative HTML version deleted]]

Re: [R] What are Type II or III contrast? (contrast() in contrast package)

2010-02-03 Thread Peng Yu
On Wed, Feb 3, 2010 at 2:12 AM, Emmanuel Charpentier charp...@bacbuc.dyndns.org wrote: Le mercredi 03 février 2010 à 00:01 -0500, David Winsemius a écrit : On Feb 2, 2010, at 11:38 PM, Peng Yu wrote: ?contrast in the contrast package gives me the following description. However, I have no

Re: [R] plm package index

2010-02-03 Thread Millo Giovanni
Dear Matt, yes you have. 'plm' doesn't support multi-column time indices, but it should happily make do with any *single* time index whose order can be recognized by R, such as, e.g., a lexicographic ordering. So you will probably want to paste your indices along these lines: year -

Re: [R] What are Type II or III contrast? (contrast() in contrast package)

2010-02-03 Thread Mitchell Maltenfort
Thank you. I was already convinced of the value of MASS (drop a hat and I'll tell you my other list of musts for a stats library) but I didn't know about the Exegeses. On Wed, Feb 3, 2010 at 3:12 AM, Emmanuel Charpentier charp...@bacbuc.dyndns.org wrote: Le mercredi 03 février 2010 à 00:01

Re: [R] strange behaviour: recognition of decimal numbers by 'which'

2010-02-03 Thread J . delasHeras
Concise and perfect answer. Thanks! I'm surprised I never came across this issue before (4 years playing with R). Jose Quoting Erik Iverson er...@ccbr.umn.edu: FAQ 7.31 j.delashe...@ed.ac.uk wrote: It is a strange behaviour in that I did not expect it... but I am sure there is a

Re: [R] color blending and transparency

2010-02-03 Thread Duncan Murdoch
On 03/02/2010 9:38 AM, baptiste auguie wrote: That makes perfect sense, thank you, except that I'm not sure where the white comes from when I set the background to transparent? You'd have to check the png device documentation or source code to find out what it does when you mix half red

Re: [R] Error with R CMD check - Packages required but not available:

2010-02-03 Thread Reena Bansal
Yes, R_LIBS have been set to include the library where myPackage1 is installed. When I start R and do library(myPackage1) it loads just fine so it is definitely installed. But somehow it is not able to do the same when I do R CMD check myPackage2. -Original Message- From: Uwe Ligges

[R] selecting a group of points from a scatterplot?

2010-02-03 Thread J . delasHeras
Hi everyone, is there a way/package in R that would allow me to select a group of points from a scatterplot by drawing a circle around them or some such? I can use 'identify' to pick individual points, but that gets tedious if one has more than 10-20 spots. I can easily select spots

[R] Can't compile R 2.10.1 on AIX

2010-02-03 Thread Waldron, Michael H
I'm trying to compile R 2.10.1 on AIX, and getting the following errors when it is trying to build the tools package: Error in read.dcf(file = descfile) : Line starting 'Package: tools ...' is malformed! Calls: makeLazyLoading ... code2LazyLoadDB - loadNamespace - parseNamespaceFile -

Re: [R] typo in contrast package's vignettes

2010-02-03 Thread Peng Yu
On Wed, Feb 3, 2010 at 8:41 AM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 9:28 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:22 PM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 12:20 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:14 PM, David

[R] Delete missing value rows from a matrix

2010-02-03 Thread anna
Hi everyone, I have a matrix with many Na's. Some rows contain some Na's and some others are entirely composed of Na's. I want to delete the rows that are entirely composed of Na's but not the other ones so I can't use a simple removeNA. Has any one an idea? - Anna Lippel -- View this

Re: [R] how to read this data file into R?

2010-02-03 Thread David Winsemius
Did you actually look at what you got? I got 129 lines: str(x) 'data.frame': 129 obs. of 9 variables: $ A: Factor w/ 28 levels [,..: 4 5 6 7 8 9 10 11 12 13 ... $ B: Factor w/ 129 levels ] 0.7982354 -5.195960 2.0059635 2.00596350 2.0059635 2.005964 2.0059635,..: 119 123

Re: [R] selecting a group of points from a scatterplot?

2010-02-03 Thread Liviu Andronic
On 2/3/10, j.delashe...@ed.ac.uk j.delashe...@ed.ac.uk wrote: Many graph plotting programs allow you to pick a group of points directly from the graph by circling them with teh mouse cursor. Is that soemthing that I can do in R? I am not sure that they will do exactly what you need, but check

[R] make a grid with longitude, latitude and bathymetry data

2010-02-03 Thread karine heerah
hi, i have a longitude vector (x) a latitude vector (y) and a matrix of bathymetry (z) with the dimensions (x,y). I have already succeeded in plotting it with the image.plot (package 'field') and the contour functions. But now, I want to make a grid in order to extract easily the bathymetry

Re: [R] color blending and transparency

2010-02-03 Thread Thomas Lumley
On Wed, 3 Feb 2010, baptiste auguie wrote: That makes perfect sense, thank you, except that I'm not sure where the white comes from when I set the background to transparent? png(testingOrder.png, bg = transparent) plot.new() par(bg=transparent) rect(0.3, 0.5, 1, 1, col=rgb(1, 0, 0, alpha=0.5))

Re: [R] How to export the examples in help(something) to a file?

2010-02-03 Thread Peng Yu
On Wed, Feb 3, 2010 at 10:01 AM, Peng Yu pengyu...@gmail.com wrote: Some examples in the help page are too long to be copied from screen. Could somebody let me know some easy way on how to extract the example to a file so that I can play with them? I forget to mention. I use a terminal version

[R] hdf files

2010-02-03 Thread karine heerah
hello, I have a problem to open an hdf file. i have downloaded the package 'hdf5' as it was advised on R seek. But when i try to load the file, the R console sends me an eror message: setwd(C:/Documents and Settings/Karine/Bureau/data/) #install.packages('hdf5') library(hdf5) sea_ice -

Re: [R] diagnostic plots

2010-02-03 Thread jim holtman
also do: plot(lm(x~y), ask=FALSE) On Wed, Feb 3, 2010 at 10:21 AM, Trafim Vanishek rdapam...@gmail.com wrote: Dear all, does anybody ever encountered the problem with diagnostic plots? x-rnorm(100) y-rnorm(100) plot(lm(x~y)) It gives the following message Waiting to confirm page

Re: [R] diagnostic plots

2010-02-03 Thread jim holtman
Hit 'enter'. There are several plots and they are being presented with par(ask=TRUE) On Wed, Feb 3, 2010 at 10:21 AM, Trafim Vanishek rdapam...@gmail.com wrote: Dear all, does anybody ever encountered the problem with diagnostic plots? x-rnorm(100) y-rnorm(100) plot(lm(x~y)) It gives

[R] comparison of parameters for nonlinear regression

2010-02-03 Thread Nathalie Yauschew-Raguenes
Hi, I have two series of data set (it's measurment of growth but under two different conditions). To model these data I use the same function which is : formula - y ~ Asym_inf + Asym_sup * ( (1 / (1 + (n1 * (exp( (tmid1-x) / scal1) )^(1/n1) ) ) ) - (1 / (1 + (n2 * (exp( (tmid2-x) / scal2)

Re: [R] color blending and transparency

2010-02-03 Thread baptiste auguie
On MacOSX I can tell Preview or Photoshop not to use a white background yet the mixing still shows a difference (with either pdf or png for that matter). So I guess it's something to do with mixing colours with the transparent channel as you say. I'll try to find the reason in the source code

Re: [R] typo in contrast package's vignettes

2010-02-03 Thread James W. MacDonald
Peng Yu wrote: On Wed, Feb 3, 2010 at 8:41 AM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 9:28 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:22 PM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 12:20 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:14

[R] Mix Distribution Fit

2010-02-03 Thread Jiang WU
Dear all, I want to ask if there is mix distribution fit toolbox, which is friendly to use in R. Which one should I choose? Thanks. Best, Jiang __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the

Re: [R] Delete missing value rows from a matrix

2010-02-03 Thread Carlos J. Gil Bellosta
Hello, You can run a row-wise all( is.na( ) ). You will then detect rows consisting of NAs only. Best regards, Carlos J. Gil Bellosta http://www.datanalytics.com anna wrote: Hi everyone, I have a matrix with many Na's. Some rows contain some Na's and some others are entirely composed of

Re: [R] tapply for function taking of 1 argument?

2010-02-03 Thread Steve Jaffe
Yes, this is clearly the key to working with subsets. Thanks -Original Message- From: Petr PIKAL [mailto:petr.pi...@precheza.cz] Sent: Wednesday, February 03, 2010 4:16 AM To: Steve Jaffe Cc: r-help@r-project.org Subject: Re: [R] tapply for function taking of 1 argument? Hi

[R] How to export the examples in help(something) to a file?

2010-02-03 Thread Peng Yu
Some examples in the help page are too long to be copied from screen. Could somebody let me know some easy way on how to extract the example to a file so that I can play with them? __ R-help@r-project.org mailing list

Re: [R] tapply for function taking of 1 argument?

2010-02-03 Thread David Freedman
also, library(plyr) ddply(d,~grp,function(df) weighted.mean(df$x,df$w)) -- View this message in context: http://n4.nabble.com/tapply-for-function-taking-of-1-argument-tp1460392p1461428.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] typo in contrast package's vignettes

2010-02-03 Thread hadley wickham
Really? Where exactly is the loophole in 'If the question relates to a contributed package ... try contacting the package maintainer first.'? How about the general R philosophy that if you dare to mistakenly submit a bug report that turns out to be a feature, not a bug, you shall be well and

Re: [R] How to export the examples in help(something) to a file?

2010-02-03 Thread Jorge Ivan Velez
Hi Peng, May be this is not the best way to do what you want, but it works for my proposes: sink('example_lm.txt') example(lm) Hit Return to see next plot: sink() Then, I just look at the file example_lm.txt on my working directory. HTH, Jorge On Wed, Feb 3, 2010 at 11:01 AM, Peng Yu

[R] Odp: Delete missing value rows from a matrix

2010-02-03 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 03.02.2010 16:53:20: Hi everyone, I have a matrix with many Na's. Some rows contain some Na's and some others are entirely composed of Na's. I want to delete the rows that are entirely composed of Na's but not the other ones so I can't use a

[R] how to combine 2 3d scatterplots in R

2010-02-03 Thread mb622
hi, I am new to R and i have managed to create 2 3d scatterplots with R and Iwaswondering if there is a way to connect them. I was also wondering how i can add arrows to the plot similar to the 2d comment arrows()? -- View this message in context:

Re: [R] tapply for function taking of 1 argument?

2010-02-03 Thread hadley wickham
On Wed, Feb 3, 2010 at 11:06 AM, David Freedman 3.14da...@gmail.com wrote: also, library(plyr) ddply(d,~grp,function(df) weighted.mean(df$x,df$w)) Or ddply(d, grp, summarise, mean = weighted.mean(x, w)) which is convenient if you want more than one output Hadley -- http://had.co.nz/

[R] graphing help: line runs off top of graph

2010-02-03 Thread Faheem Mitha
Hi, See the files at http://bulldog.duhs.duke.edu/~faheem/R/ Usage is $ Rscript memgraph.R meminfo.csv Output is meminfo.pdf. As you can see, one of the lines (blue) runs off the top of the graph. Can anyone suggest a way to avoid this happening? Please CC me on any reply. Thanks in

Re: [R] svm

2010-02-03 Thread Steve Lianoglou
HI Amy, On Wed, Feb 3, 2010 at 1:56 AM, Amy Hessen amy_4_5...@hotmail.com wrote: Hi Steve, Could you please help me in this point?: I use SVM of R and I’m trying some datasets from UCI but when I compare the results of my program( that does not do anything more than calling SVM) with the

Re: [R] Error with R CMD check - Packages required but not available:

2010-02-03 Thread Reena Bansal
I tried to bypass R CMD check myPackage2 and did the following R CMD build myPackage2 R CMD INSTALL -l ~/Rlibs myPackage2 and this works, I can load myPackage2 into my R session. Wondering why R CMD check failed and is it not necessary for R CMD check to work before I can build the package?

[R] What font exactly is tkrplot looking for

2010-02-03 Thread Kevin E. Thorpe
Hello. I am getting an error thrown from tkrplot. It is X11 font -adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*, face 1 at size 12 could not be loaded sessionInfo() R version 2.10.1 Patched (2009-12-29 r50852) i686-pc-linux-gnu locale: [1] LC_CTYPE=en_US LC_NUMERIC=C

Re: [R] graphing help: line runs off top of graph

2010-02-03 Thread David Winsemius
On Feb 3, 2010, at 12:53 PM, Faheem Mitha wrote: Hi, See the files at http://bulldog.duhs.duke.edu/~faheem/R/ Usage is $ Rscript memgraph.R meminfo.csv Output is meminfo.pdf. As you can see, one of the lines (blue) runs off the top of the graph. Can anyone suggest a way to avoid this

[R] offlist Re: typo in contrast package's vignettes

2010-02-03 Thread David Winsemius
On Feb 3, 2010, at 10:53 AM, Peng Yu wrote: On Wed, Feb 3, 2010 at 8:41 AM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 9:28 AM, Peng Yu wrote: On Tue, Feb 2, 2010 at 11:22 PM, David Winsemius dwinsem...@comcast.net wrote: On Feb 3, 2010, at 12:20 AM, Peng Yu

Re: [R] how to combine 2 3d scatterplots in R

2010-02-03 Thread Uwe Ligges
On 03.02.2010 18:38, mb622 wrote: hi, I am new to R and i have managed to create 2 3d scatterplots with R and Iwaswondering if there is a way to connect them. In most cases it is advisable to just add points as shown in the examples of ?scatterplot3d I was also wondering how i can add

Re: [R] tapply for function taking of 1 argument?

2010-02-03 Thread Gabor Grothendieck
Also try this: library(sqldf) DF - data.frame(data = 1:10, groups = rep(1:2, 5), weights = 1) sqldf(select groups, sum(data * weights)/sum(weights) 'wtd mean' from DF group by groups) groups wtd mean 1 15 2 26 On Tue, Feb 2, 2010 at 5:06 PM, sjaffe

[R] How to flatten a tree (based on list) to a certain depth?

2010-02-03 Thread Peng Yu
Suppose that I have the following list of lists of frames 'root' (let's call it a 'tree' of frames). I want to flatten it to be a list of frames. However, if I unlist(root), it will flatten the frames as well. Is there a simply way to flatten the tree to certain depth?

Re: [R] tapply for function taking of 1 argument?

2010-02-03 Thread sjaffe
Thanks, I’m actually more comfortable with vector-ish syntax than sql-ish but this is a good thing to keep in mind… I wonder how it compares in performance versus ‘by’ or ‘tapply’ From: Gabor Grothendieck [via R] [mailto:ml-node+1461531-1948782...@n4.nabble.com] Sent: Wednesday,

Re: [R] How to flatten a tree (based on list) to a certain depth?

2010-02-03 Thread Steve Lianoglou
Hi, On Wed, Feb 3, 2010 at 1:19 PM, Peng Yu pengyu...@gmail.com wrote: Suppose that I have the following list of lists of frames 'root' (let's call it a 'tree' of frames). I want to flatten it to be a list of frames. However, if I unlist(root), it will flatten the frames as well. Is there a

Re: [R] tapply for function taking of 1 argument?

2010-02-03 Thread Bert Gunter
My editorial opinion only: It will of necessity be slower (because there's more machinery underlying the sqldf package); but I doubt whether it would be noticeably slower than the native R solution in most practical situations. The same would be true for plyR's implementation (it relies on the

Re: [R] color blending and transparency

2010-02-03 Thread baptiste auguie
Thanks for this complementary information. My head itches slightly when reading about these virtual layers with unidirectional absorption and reflection properties but I guess that's imputable to my personal background as a physicist. I still have a few questions, - is this behavior documented?

[R] About the risk code in the fportfolio package

2010-02-03 Thread lai
Hello, I have a problem with fPortfolio recently. I am using below code: Data = read.table(hf.txt,header = TRUE,sep = ) Data = Data[, c(CA, SS, EM, EMN, ED, DS, MS, RA, FIA, GM, LSE, MF, SP500, NASDAQ, JPM)] d = as.timeSeries(Data) class(d) Spec = portfolioSpec() setNFrontierPoints(Spec) =

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