soon.
Sincerely,
DB Tsai
Machine Learning Engineer
Alpine Data Labs
--
Web: http://alpinenow.com/
On Mon, Mar 31, 2014 at 11:38 PM, Tsai Li Ming mailingl...@ltsai.comwrote:
Hi,
Is the code available for Hadoop to calculate the Logistic Regression
hyperplane
with
Spark in SF Machine Learning Meetup, please let me know.
Thanks.
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---
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Hi Dong,
This is pretty much what I did. I run into the same issue you have.
Since I'm not developing yarn related stuff, I just excluded those two
yarn related project from intellji, and it works. PS, you may need to
exclude java8 project as well now.
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DB Tsai
What I suggested will not work if # of records you want to drop is more
than the data in first partition. In my use-case, I only drop the first
couple lines, so I don't have this issue.
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Which version of mllib are you using? For Spark 1.0, mllib will
support sparse feature vector which will improve performance a lot
when computing the distance between points and centroid.
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---
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tolerance and data splitting
to disk.
It will be nice to have an API that we can do this type of book-keeping
with native support.
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On Sat, Apr
Our customer asked us to implement Naive Bayes which should be able to at
least train news20 one year ago, and we implemented for them in Hadoop
using distributed cache to store the model.
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Your code is unformatted. Can u paste the whole file in gist and i can take
a look for u.
On Apr 28, 2014 10:42 PM, Earthson earthson...@gmail.com wrote:
I've moved SparkContext and RDD as parameter of train. And now it tells me
that SparkContext need to serialize!
I think the the problem is
You can drop header in csv by
rddData.mapPartitionsWithIndex((partitionIdx: Int, lines: Iterator[String])
= {
if (partitionIdx == 0) {
lines.drop(1)
}
lines
}
On May 2, 2014 6:02 PM, SK skrishna...@gmail.com wrote:
1) I have a csv file where one of the field has integer data but it
breeze jar in the spark flat
assembly jar, so you don't need to add breeze dependency yourself.
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On Sun, May 4, 2014 at 4:07 AM, wxhsdp wxh
jar api like Yadid said.
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On Sun, May 4, 2014 at 10:24 PM, wxhsdp wxh...@gmail.com wrote:
Hi, DB, i think it's something related to sbt
It seems that the code isn't managed in github. Can be downloaded from
http://www.csie.ntu.edu.tw/~cjlin/libsvmtools/distributed-liblinear/spark/spark-liblinear-1.94.zip
It will be easier to track the changes in github.
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the loop have to be serializable. Since the for-loop is serializable
in scala, I guess you have something non-serializable inside the for-loop.
The while-loop in scala is native, so you won't have this issue if you use
while-loop.
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Hi wxhsdp,
See https://github.com/scalanlp/breeze/issues/142 and
https://github.com/fommil/netlib-java/issues/60 for details.
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On Tue, May 13
tomorrow.
Thanks.
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On Tue, May 13, 2014 at 11:41 PM, Xiangrui Meng men...@gmail.com wrote:
I don't know whether this would fix the problem
honor
it. I'm trying to figure out the problem now.
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On Wed, May 14, 2014 at 5:46 AM, wxhsdp wxh...@gmail.com wrote:
Hi, DB
i've add breeze
will not be seen.
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in
JVM. Users can use the classes directly.
https://github.com/dbtsai/classloader-experiement/blob/master/calling/src/main/java/Calling3.java
I'm now porting example 3) to Spark, and will let you know if it works.
Thanks.
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The jars are actually there (and in classpath), but you need to load
through reflection. I've another thread giving the workaround.
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On Fri
classNotFound exception.
Thanks.
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On Wed, May 14, 2014 at 6:04 PM, Xiangrui Meng men...@gmail.com wrote:
In SparkContext#addJar, for yarn
not serializable, it will raise exception.
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On Sun, May 18, 2014 at 12:58 PM, Robert James srobertja...@gmail.comwrote:
I see - I didn't realize that scope
/latest/mllib-optimization.html
for detail.
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On Wed, Jun 4, 2014 at 7:56 PM, Xiangrui Meng men...@gmail.com wrote:
Hi Krishna,
Specifying executor
Hi Krishna,
It should work, and we use it in production with great success.
However, the constructor of LogisticRegressionModel is private[mllib],
so you have to write your code, and have the package name under
org.apache.spark.mllib instead of using scala console.
Sincerely,
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Hi Aslan,
You can check out the unittest code of GradientDescent.runMiniBatchSGD
https://github.com/apache/spark/blob/master/mllib/src/test/scala/org/apache/spark/mllib/optimization/GradientDescentSuite.scala
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tracker
for each operation will be very expensive. Is there a way to disable
this behavior?
Thanks.
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What if there are multiple threads using the same spark context, will
each of thread have it own UI? In this case, it will quickly run out
of the ports.
Thanks.
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Hi Nick,
How does reduce work? I thought after reducing in the executor, it
will reduce in parallel between multiple executors instead of pulling
everything to driver and reducing there.
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Hi Aslan,
Currently, we don't have the utility function to do so. However, you
can easily implement this by another map transformation. I'm working
on this feature now, and there will be couple different available
normalization option users can chose.
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at 11:13 AM, Aslan Bekirov aslanbeki...@gmail.com
wrote:
Thanks a lot DB.
I will try to do Znorm normalization using map transformation.
BR,
Aslan
On Thu, Jun 12, 2014 at 12:16 AM, DB Tsai dbt...@stanford.edu wrote:
Hi Aslan,
Currently, we don't have the utility function to do so
Hi Congrui,
Since it's private in mllib package, one workaround will be write your
code in scala file with mllib package in order to use the constructor
of LogisticRegressionModel.
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---
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Is your data normalized? Sometimes, GD doesn't work well if the data
has wide range. If you are willing to write scala code, you can try
LBFGS optimizer which converges better than GD.
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Hi Congrui,
We're working on weighted regularization, so for intercept, you can
just set it as 0. It's also useful when the data is normalized but
want to solve the regularization with original data.
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---
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Hi Congrui,
I mean create your own TrainMLOR.scala with all the code provided in
the example, and have it under package org.apache.spark.mllib
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Hi Xiangrui,
What's different between treeAggregate and aggregate? Why
treeAggregate scales better? What if we just use mapPartition, will it
be as fast as treeAggregate?
Thanks.
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LinkedIn
Hi Xiangrui,
Does it mean that mapPartition and then reduce shares the same
behavior as aggregate operation which is O(n)?
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On Tue, Jun 17
))
}
System.setProperty(SPARK_YARN_MODE, true)
val sparkConf = new SparkConf
val args = getArgsFromConf(conf)
new Client(new ClientArguments(args, sparkConf), hadoopConfig,
sparkConf).run
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, etc.
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On Thu, Jun 19, 2014 at 12:08 PM, Koert Kuipers ko...@tresata.com wrote:
db tsai,
if in yarn-cluster mode the driver runs inside yarn, how
There is no python binding for LBFGS. Feel free to submit a PR.
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On Wed, Jun 25, 2014 at 1:41 PM, Mohit Jaggi mohitja...@gmail.com wrote
You may try LBFGS to have more stable convergence. In spark 1.1, we will be
able to use LBFGS instead of GD in training process.
On Jul 4, 2014 1:23 PM, Thomas Robert tho...@creativedata.fr wrote:
Hi all,
I too am having some issues with *RegressionWithSGD algorithms.
Concerning your issue
Actually, the one needed to install the jar to each individual node is
standalone mode which works for both MR1 and MR2. Cloudera and
Hortonworks currently support spark in this way as far as I know.
For both yarn-cluster or yarn-client, Spark will distribute the jars
through distributed cache
spark-clinet mode runs driver in your application's JVM while
spark-cluster mode runs driver in yarn cluster.
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On Mon, Jul 7, 2014 at 5:44 PM
not be
straightforward by just changing the version in spark build script.
Jetty 9.x required Java 7 since the servlet api (servlet 3.1) requires
Java 7.
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It means pulling the code from latest development branch from git
repository.
On Jul 9, 2014 9:45 AM, AlexanderRiggers alexander.rigg...@gmail.com
wrote:
By latest branch you mean Apache Spark 1.0.0 ? and what do you mean by
master? Because I am using v 1.0.0 - Alex
--
View this message in
Are you using 1.0 or current master? A bug related to this is fixed in
master.
On Jul 12, 2014 8:50 AM, Srikrishna S srikrishna...@gmail.com wrote:
I am run logistic regression with SGD on a problem with about 19M
parameters (the kdda dataset from the libsvm library)
I consistently see that
https://issues.apache.org/jira/browse/SPARK-2156
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On Sat, Jul 12, 2014 at 5:23 PM, Srikrishna S srikrishna...@gmail.com wrote:
I am using
, and sparse data is supported.
It will be interesting to see new benchmark result.
Anyone familiar with BIDMach? Are they as fast as they claim?
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I ran into this issue as well. The workaround by copying jar and ivy
manually suggested by Shivaram works for me.
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On Fri, Aug 1, 2014 at 3:31
Spark cached the RDD in JVM, so presumably, yes, the singleton trick should
work.
Sent from my Google Nexus 5
On Aug 9, 2014 11:00 AM, Kevin James Matzen kmat...@cs.cornell.edu
wrote:
I have a related question. With Hadoop, I would do the same thing for
non-serializable objects and setup().
and there, so we're looking forward to
your feedback, and please let us know what you think.
We'll continue to improve it and we'll be adding Gradient Boosting in the
near future as well.
Thanks.
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---
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Hi Cui
You can take a look at multinomial logistic regression PR I created.
https://github.com/apache/spark/pull/1379
Ref: http://www.slideshare.net/dbtsai/2014-0620-mlor-36132297
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Hi Debasish,
I didn't try one-vs-all vs softmax regression. One issue is that for
one-vs-all, we have to train k classifiers for k classes problem. The
training time will be k times longer.
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we have internal version requiring some cleanup for open source
project.
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On Wed, Sep 3, 2014 at 7:34 PM, Xiangrui Meng men...@gmail.com wrote
For saving the memory, I recommend you compress the cached RDD, and it will
be couple times smaller than original data sets.
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---
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On Wed, Sep 3
Yes. But you need to store RDD as *serialized* Java objects. See the
session of storage level
http://spark.apache.org/docs/latest/programming-guide.html
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.
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On Sat, Sep 13, 2014 at 2:12 AM, Yanbo Liang yanboha...@gmail.com wrote:
Hi All,
I found that LogisticRegressionWithLBFGS interface
by multiply a constant to the weights.
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On Sun, Sep 28, 2014 at 11:48 AM, Yanbo Liang yanboha...@gmail.com wrote:
Hi
We have used
You dont have to include breeze jar which is already in spark assembly jar.
For native one, its optional.
Sent from my Google Nexus 5
On Oct 3, 2014 8:04 PM, Priya Ch learnings.chitt...@gmail.com wrote:
yes. I have included breeze-0.9 in build.sbt file. I ll change this to
0.7. Apart from
,
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On Mon, Sep 29, 2014 at 11:45 AM, Yanbo Liang yanboha...@gmail.com wrote:
Thank you for all your patient response.
I can conclude that if the data
- 1 until rdds.length) {
temp = temp.unionAll(rdds(i))
}
temp
}
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On Mon, Oct 13, 2014 at 7:22 PM, Nicholas Chammas
nicholas.cham
I saw similar bottleneck in reduceByKey operation. Maybe we can
implement treeReduceByKey to reduce the pressure on single executor
reducing the particular key.
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here
https://github.com/cloudera/spark/tree/cdh5-1.1.0_5.2.0
PS, I don't test it yet, but will test it in the following couple days, and
report back.
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You can do this using flatMap which return a Seq of (key, value) pairs.
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On Mon, Oct 20, 2014 at 9:31 AM, HARIPRIYA AYYALASOMAYAJULA
aharipriy
)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
java.lang.Thread.run(Thread.java:744)
Sincerely,
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It seems that this issue should be addressed by
https://github.com/apache/spark/pull/2890 ? Am I right?
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On Wed, Oct 22, 2014 at 11:54 AM, DB
Or can it be solved by setting both of the following setting into true for now?
spark.shuffle.spill.compress true
spark.shuffle.compress ture
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PS, sorry for spamming the mailing list. Based my knowledge, both
spark.shuffle.spill.compress and spark.shuffle.compress are default to
true, so in theory, we should not run into this issue if we don't
change any setting. Is there any other big we run into?
Thanks.
Sincerely,
DB Tsai
We don't have SVMWithLBFGS, but you can check out how we implement
LogisticRegressionWithLBFGS, and we also deal with some condition
number improving stuff in LogisticRegressionWithLBFGS which improves
the performance dramatically.
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oh, we just train the model in the standardized space which will help
the convergence of LBFGS. Then we convert the weights to original
space so the whole thing is transparent to users.
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yeah, column normalizarion. for some of the datasets, without doing
this, it will not be converged.
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On Fri, Oct 24, 2014 at 3:46 PM, Debasish
Hi Andrew,
We were running the master after SPARK-3613. Will give another shot
against the current master while Josh fixed couple issues in shuffle.
Thanks.
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/apache/spark/mllib/util/LocalSparkContext.scala
as an example.
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On Sun, Nov 9, 2014 at 9:12 PM, Kevin Burton bur...@spinn3r.com wrote:
What’s
JPMML evaluator just changed their license to AGPL or commercial
license, and I think AGPL is not compatible with apache project. Any
advice?
https://github.com/jpmml/jpmml-evaluator
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I also worry about that the author of JPMML changed the license of
jpmml-evaluator due to his interest of his commercial business, and he
might change the license of jpmml-model in the future.
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Also, are you using the latest master in this experiment? A PR merged
into the master couple days ago will spend up the k-means three times.
See
https://github.com/apache/spark/commit/7fc49ed91168999d24ae7b4cc46fbb4ec87febc1
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Can you try to run the same job using the assembly packaged by
make-distribution as we discussed in the other thread.
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On Fri, Dec 5, 2014
You just need to use the latest master code without any configuration
to get performance improvement from my PR.
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On Mon, Dec 8, 2014 at 7:53
You need to do the StandardScaler to help the convergency yourself.
LBFGS just takes whatever objective function you provide without doing
any scaling. I will like to provide LinearRegressionWithLBFGS which
does the scaling internally in the nearly feature.
Sincerely,
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the coefficients to the oringal space
from the scaled space, the intercept can be computed by w0 = y - \sum
x_n w_n where x_n is the average of column n.
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= scalerWithResponse.transform(rddVector).map(x= {
(x(x.size - 1), Vectors.dense(x.toArray.slice(0, x.size -1))
})
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On Fri, Dec 12, 2014 at 12:23
want to break down which part of your code causes the
issue to make debugging easier.
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On Thu, Dec 11, 2014 at 4:48 AM, Muhammad Ahsan
muhammad.ah
Just out of my curiosity. Do you manually apply this patch and see if
this can actually resolve the issue? It seems that it was merged at
some point, but reverted due to that it causes some stability issue.
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Sounds great.
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On Mon, Dec 22, 2014 at 5:27 AM, Franco Barrientos
franco.barrien...@exalitica.com wrote:
Thanks again DB Tsai
.
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---
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On Fri, Mar 13, 2015 at 2:41 PM, cjwang c...@cjwang.us wrote:
I am running LogisticRegressionWithLBFGS. I got these lines on my console:
2015-03-12 17:38:03,897 ERROR
PS, I will recommend you compress the data when you cache the RDD.
There will be some overhead in compression/decompression, and
serialization/deserialization, but it will help a lot for iterative
algorithms with ability to caching more data.
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I would recommend to upload those jars to HDFS, and use add jars
option in spark-submit with URI from HDFS instead of URI from local
filesystem. Thus, it can avoid the problem of fetching jars from
driver which can be a bottleneck.
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it will cause problem for the algorithm.
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---
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On Mon, Mar 16, 2015 at 3:19 PM, EcoMotto Inc. ecomot...@gmail.com wrote:
Hello,
I am new to spark streaming API.
I wanted to ask if I can apply LBFGS
We fixed couple issues in breeze LBFGS implementation. Can you try
Spark 1.3 and see if they still exist? Thanks.
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On Mon, Mar 16, 2015 at 12:48 PM, Chang-Jia Wang c...@cjwang.us wrote:
I
Are you deploying the windows dll to linux machine?
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On Wed, Mar 25, 2015 at 3:57 AM, Xi Shen davidshe...@gmail.com wrote:
I think you meant to use the --files to deploy the DLLs. I gave
PS, we were using Breeze's activeIterator originally as you can see in
the old code, but we found there are overhead there, so we implement
our own implementation which results 4x faster. See
https://github.com/apache/spark/pull/3288 for detail.
Sincerely,
DB Tsai
Hi Denys,
I don't see any issue in your python code, so maybe there is a bug in
python wrapper. If it's in scala, I think it should work. BTW,
LogsticRegressionWithLBFGS does the standardization internally, so you
don't need to do it yourself. It worths giving it a try!
Sincerely,
DB Tsai
the scaling and intercepts implicitly in objective
function so no overhead of creating new transformed dataset.
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---
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On Wed, Apr 29, 2015 at 1:21 AM, selim namsi selim.na...@gmail.com wrote:
Thank
LogisticRegression in MLlib package supports multilable classification.
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---
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On Tue, May 5, 2015 at 1:13 PM, peterg pe...@garbers.me wrote:
Hi all,
I'm looking to implement a Multilabel
Hi Xin,
If you take a look at the model you trained, the intercept from Spark
is significantly smaller than StatsModel, and the intercept represents
a prior on categories in LOR which causes the low accuracy in Spark
implementation. In LogisticRegressionWithLBFGS, the intercept is
regularized due
?
Thanks!
On Thursday, June 4, 2015, DB Tsai dbt...@dbtsai.com wrote:
By default, the depth of the tree is 2. Each partition will be one node.
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---
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On Thu, Jun 4, 2015 at 10:46 AM
By default, the depth of the tree is 2. Each partition will be one node.
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---
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On Thu, Jun 4, 2015 at 10:46 AM, Raghav Shankar raghav0110...@gmail.com wrote:
Hey Reza,
Thanks for your response
Which part of StandardScaler is slow? Fit or transform? Fit has shuffle but
very small, and transform doesn't do shuffle. I guess you don't have enough
partition, so please repartition your input dataset to a number at least
larger than the # of executors you have.
In Spark 1.4's new ML pipeline
.
On Jun 3, 2015, at 9:53 PM, DB Tsai dbt...@dbtsai.com
javascript:_e(%7B%7D,'cvml','dbt...@dbtsai.com'); wrote:
Which part of StandardScaler is slow? Fit or transform? Fit has shuffle
but very small, and transform doesn't do shuffle. I guess you don't have
enough partition, so please
}
}.toArray.sorted(ord)
}
}
}
def treeTop(num: Int)(implicit ord: Ordering[T]): Array[T] = withScope {
treeTakeOrdered(num)(ord.reverse)
}
Sincerely,
DB Tsai
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Blog: https://www.dbtsai.com
PGP Key ID: 0xAF08DF8D
https://pgp.mit.edu
As Robin suggested, you may try the following new implementation.
https://github.com/apache/spark/commit/6a827d5d1ec520f129e42c3818fe7d0d870dcbef
Thanks.
Sincerely,
DB Tsai
--
Blog: https://www.dbtsai.com
PGP Key ID: 0xAF08DF8D
https
Not really yet. But at work, we do GBDT missing values imputation, so
I've the interest to port them to mllib if I have enough time.
Sincerely,
DB Tsai
--
Blog: https://www.dbtsai.com
PGP Key ID: 0xAF08DF8D
On Fri, Jun 19, 2015 at 1:23 PM
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