Seeing something like this as well. When I force sync:

Failed to set up dependencies
  Warning:Unable to find module with Gradle path
':common:foo:foo-android'. Linking to library 'foo-android' instead.
  Warning:Unable to find module with Gradle path ':common:bar'.
Linking to library 'bar' instead.
  Error:Unable to find module with Gradle path ':common:foo:foo-annotations'.
  Warning:Unable to find module with Gradle path ':common:baz'.
Linking to library 'baz' instead.
  Error:Unable to find module with Gradle path ':hey:hey-protos'.
  Warning:Unable to find module with Gradle path ':common:baz'.
Linking to library 'baz' instead.
  Warning:Unable to find module with Gradle path ':common:bar'.
Linking to library 'bar' instead.
  Error:Unable to find module with Gradle path ':hi:hi-protos'.
  Error:Unable to find module with Gradle path ':common:foo:foo-annotations'.

​


On Mon, Jun 9, 2014 at 7:11 PM, Kyle Fowler <[email protected]> wrote:

> After this last update, the IDE decides to not pickup one/many of the
> projects in settings.gradle as modules for the project. For me this is only
> happening to 1 of the 8 modules for me but 5/8 for a coworker. When going
> to open one of the build.gradle files for a project that has been missed,
> AS gives me the nice warning that it thinks it isnt included (
> http://cl.ly/image/3q1N18470f15). Clicking on the "add now" action, I get
> presented with the new module dialog but when I try to add this module it
> says "Project already contains module with this name", which is correct, it
> does. So why doesn't AS pick this up as a module where it really matters?
> Is this a known issue? I havent seen anything about similar behavior.
>
> All of the build.gradle files in the project user buildTools 19.1 and the
> project has a gradle version of 1.11. Building via gradle from the CLI
> works just fine, only thing having issues is AS.
>
> Any ideas would be really appreciated! Thanks.
>
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