IntelliJ Idea 14.1.2 I am still having the same issue.. 

On Friday, 13 June 2014 16:37:01 UTC+8, Jelle Nagels wrote:
>
> This has been fixed. I just received the update! Thanks!
>
> Op woensdag 11 juni 2014 18:33:46 UTC+2 schreef Nicholas Campion:
>>
>> Thanks for the quick fix. We're seeing this same error and its now 
>> disrupting our development.  When can we expect the weekly release?
>>
>> On Tuesday, June 10, 2014 10:55:42 PM UTC-5, Alex Ruiz wrote:
>>>
>>> A fix will be included in this week's release: 
>>> https://android-review.googlesource.com/97446 . Sorry for the trouble!
>>>
>>>
>>> On Tue, Jun 10, 2014 at 7:16 AM, Kyle Fowler <[email protected]> 
>>> wrote:
>>>
>>>> This sounds close to what I'm experiencing but I also have the issue 
>>>> with projects only 1 level deep. The issue is not consistent between our 
>>>> dev team, a bunch of people have different versions of the issue effecting 
>>>> all levels of build.gradle nesting. My issue looks like the one below 
>>>> where 
>>>> appone and libone are recognized by AS but apptwo is not.
>>>>
>>>> | Project
>>>> |    build.gradle
>>>> |    settings.gradle
>>>> |    appone
>>>> |         build.gradle
>>>> |    apptwo
>>>> |         build.gradle
>>>> |    libs
>>>> |         libone
>>>> |            build.gradle
>>>>
>>>> On Tuesday, June 10, 2014 4:03:32 AM UTC-7, Alex Ruiz wrote:
>>>>
>>>>> There is a ticket that Studio cannot see gradle modules in 
>>>>> subdirectories more than 1 level deep: https://code.google.com/p/
>>>>> android/issues/detail?id=71098 . 
>>>>>
>>>>> Jake, the output you provided seems to confirm this is the bug you are 
>>>>> experiencing. 
>>>>>
>>>>> Kyle, can you please confirm this as well? 
>>>>>
>>>>> This is really strange behavior, since this area of the code hasn't 
>>>>> been changed. I'm working on a fix.
>>>>>
>>>>> Thanks!
>>>>> -Alex
>>>>>
>>>>>
>>>>> On Mon, Jun 9, 2014 at 7:34 PM, Jake Wharton <[email protected]> 
>>>>> wrote:
>>>>>
>>>>>> Seeing something like this as well. When I force sync:
>>>>>>
>>>>>> Failed to set up dependencies
>>>>>>   Warning:Unable to find module with Gradle path 
>>>>>> ':common:foo:foo-android'. Linking to library 'foo-android' instead.
>>>>>>   Warning:Unable to find module with Gradle path ':common:bar'. Linking 
>>>>>> to library 'bar' instead.
>>>>>>   Error:Unable to find module with Gradle path 
>>>>>> ':common:foo:foo-annotations'.
>>>>>>   Warning:Unable to find module with Gradle path ':common:baz'. Linking 
>>>>>> to library 'baz' instead.
>>>>>>   Error:Unable to find module with Gradle path ':hey:hey-protos'.
>>>>>>   Warning:Unable to find module with Gradle path ':common:baz'. Linking 
>>>>>> to library 'baz' instead.
>>>>>>   Warning:Unable to find module with Gradle path ':common:bar'. Linking 
>>>>>> to library 'bar' instead.
>>>>>>   Error:Unable to find module with Gradle path ':hi:hi-protos'.
>>>>>>   Error:Unable to find module with Gradle path 
>>>>>> ':common:foo:foo-annotations'.
>>>>>>
>>>>>> ​
>>>>>>
>>>>>>
>>>>>> On Mon, Jun 9, 2014 at 7:11 PM, Kyle Fowler <[email protected]> 
>>>>>> wrote:
>>>>>>
>>>>>>> After this last update, the IDE decides to not pickup one/many of 
>>>>>>> the projects in settings.gradle as modules for the project. For me this 
>>>>>>> is 
>>>>>>> only happening to 1 of the 8 modules for me but 5/8 for a coworker. 
>>>>>>> When 
>>>>>>> going to open one of the build.gradle files for a project that has been 
>>>>>>> missed, AS gives me the nice warning that it thinks it isnt included (
>>>>>>> http://cl.ly/image/3q1N18470f15). Clicking on the "add now" action, 
>>>>>>> I get presented with the new module dialog but when I try to add this 
>>>>>>> module it says "Project already contains module with this name", which 
>>>>>>> is 
>>>>>>> correct, it does. So why doesn't AS pick this up as a module where it 
>>>>>>> really matters? Is this a known issue? I havent seen anything about 
>>>>>>> similar 
>>>>>>> behavior.
>>>>>>>
>>>>>>> All of the build.gradle files in the project user buildTools 19.1 
>>>>>>> and the project has a gradle version of 1.11. Building via gradle from 
>>>>>>> the 
>>>>>>> CLI works just fine, only thing having issues is AS.
>>>>>>>
>>>>>>> Any ideas would be really appreciated! Thanks.
>>>>>>>
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>>>>>>
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>>>>>
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>>>
>>>

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