Sudhakar Pamidighantam created AIRAVATA-523:
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Summary: Airavata incorrectly labels failed workflows as finished
successfully.
Key: AIRAVATA-523
URL: https://issues.apache.org/jira/browse/AIRAVATA-523
Project: Airavata
Issue Type: Bug
Reporter: Sudhakar Pamidighantam
Workflow details here.
xbayaWorkflowName":"dmh2__1343788729","status":"STARTED","startDate":1343788729,"userId":"spamidig","workflowIdtoAvirata":"ParamChem5-fullWithURLs_7bcf9180-60d1-4f65-b996f56f2ada93d6","cgenffOutputMolName":"dmh2","cgenffOutputPath":"C:\\Users\\spamidig\\gridchem\\paramchem\\paramchemData\\cgenff_project\\dmh2_20120731","workflowId":"ParamChem5-fullWithURLs_Tue
Jul 31 21:38:49 CDT 2012","projectName":"spamidig"}]}
Monitor Dash Board message log entries.
00:06:05.231 08/01/12 charmm_pot_ener_scan_fit_invoke INFO Status
of job https://ember.ncsa.illinois.edu:50886/59650/1343797544/is DONE
00:06:44.518 08/01/12 charmm_pot_ener_scan_fit_invoke
computationDuration [Computation Time taken = 60534 ms]
00:06:53.290 08/01/12 charmm_pot_ener_scan_fit_invoke receivedResult
step5B2_predicted_rmsd=4.86556,
predicted_plot_ene=/gpfs2/scratch/users/ccguser/xbaya-workdirs/charmm_pot_ener_scan_fit_proposed_Wed_Aug_01_01_05_33_EDT_2012_2c1c1cfe-df2b-488c-a88d-e80b4dbbf39d/dmh2/fit/fit_dmh22.ene,
fitted_dihedrals_prm=/gpfs2/scratch/users/ccguser/xbaya-workdirs/charmm_pot_ener_scan_fit_proposed_Wed_Aug_01_01_05_33_EDT_2012_2c1c1cfe-df2b-488c-a88d-e80b4dbbf39d/dmh2/fit/fit_dmh22.prm,
step5B2_charmm_rmsd=4.86541,
charmm_plot_ene=/gpfs2/scratch/users/ccguser/xbaya-workdirs/charmm_pot_ener_scan_fit_proposed_Wed_Aug_01_01_05_33_EDT_2012_2c1c1cfe-df2b-488c-a88d-e80b4dbbf39d/dmh2/fit_verify/scan_dmh23.ene,
molecule_dir_out_tgz=/gpfs2/scratch/users/ccguser/xbaya-workdirs/Model_Ref_Data_Prep_proposed_Tue_Jul_31_22_40_00_EDT_2012_d6ea933e-a94e-42e4-bef4-7f21ac86c94f/molecule_dir_out.tgz
00:07:02.575 08/01/12 charmm_pot_ener_scan_validate_init_guess_invoke
invokingServiceFailed Error in getting output. name: molecule_dir_out_tgz:
org.apache.airavata.xbaya.XBayaException: Error in getting output. name:
molecule_dir_out_tgz
00:07:02.685 08/01/12 charmm_pot_ener_scan_fit_invoke
invokingServiceFailed Error in getting output. name: Parameter:
org.apache.airavata.xbaya.XBayaException: Error in getting output. name:
Parameter
00:07:02.943 08/01/12 sendingResult
00:07:03.815 08/01/12 workflowTerminated Workflow
finished successfully.
00:07:03.839 08/01/12 sendingResult
Notice that charmm_pot_ener_scan_fit_invoke step failed with an error while
later the workflow shows terminated with finished successfully. The same
message also appears in the API based monitor as well.
These should labelled as workflow terminated with error in a step.
Thanks,
Sudhakar.
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