Dalcin, As you can see, the web interface does not work the way you expect.
Salud! 2016-09-01 11:20 GMT-03:00 Eduardo Dalcin <edalcin at jbrj.org>: > Thanks Mauro. > > The point is that I want to use the web interface provided by GBIF. > > Best > > Eduardo > > > -------------------------------- > *Eduardo Dalcin <http://eduardo.dalc.in>* > Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ > Diretoria de Pesquisas > e-mail: edalcin at jbrj.org > Trabalho / Work: +55 21 3204 2116 > WhatsApp / Telegram: +55 21 98393 3344 > Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> > -------------------------------- > > On Thu, Sep 1, 2016 at 11:16 AM, Mauro Cavalcanti <maurobio at gmail.com> > wrote: > >> Here is how to achieve this using Python/pygbif (what else? ;-)) >> >> from pprint import pprint >> from pygbif import species, occurrences >> >> taxon_name = "Plantae" # a kingdom level taxon >> taxon_rank = "kingdom" >> >> key = species.name_backbone(name=taxon_name, rank=taxon_rank)["usageKey"] >> n = occurrences.count(taxonKey=key, isGeoreferenced=True) >> print format(n, ','), " record(s) for ", taxon_name >> >> max = 5 # maximum number of records to retrieve >> results = occurrences.search(taxonKey=key, >> basisOfRecord="PRESERVED_SPECIMEN", >> hasCoordinate=True, limit=max) >> for x in results["results"]: >> print pprint(x) # results are returned in JSON format >> >> Hope it helps. >> >> Salud! >> >> 2016-09-01 10:28 GMT-03:00 Eduardo Dalcin <edalcin at jbrj.org>: >> >>> Oops: http://www.gbif.org/occurrence/search?taxon_key=Planta >>> e&basis_of_record=PRESERVED_SPECIMEN >>> >>> >>> -------------------------------- >>> *Eduardo Dalcin <http://eduardo.dalc.in>* >>> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >>> Diretoria de Pesquisas >>> e-mail: edalcin at jbrj.org >>> Trabalho / Work: +55 21 3204 2116 >>> WhatsApp / Telegram: +55 21 98393 3344 >>> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >>> -------------------------------- >>> >>> On Thu, Sep 1, 2016 at 10:27 AM, Eduardo Dalcin <edalcin at jbrj.org> >>> wrote: >>> >>>> That's it! Thanks! >>>> >>>> I don't get this: >>>> [image: Inline image 1] >>>> >>>> >>>> -------------------------------- >>>> *Eduardo Dalcin <http://eduardo.dalc.in>* >>>> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >>>> Diretoria de Pesquisas >>>> e-mail: edalcin at jbrj.org >>>> Trabalho / Work: +55 21 3204 2116 >>>> WhatsApp / Telegram: +55 21 98393 3344 >>>> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >>>> -------------------------------- >>>> >>>> On Thu, Sep 1, 2016 at 10:23 AM, Tim Robertson <trobertson at gbif.org> >>>> wrote: >>>> >>>>> Thanks Eduardo. >>>>> >>>>> No, you can type ?Plantae? or any higher taxa in the scientific name >>>>> filter and it will assist with autocompletion. >>>>> >>>>> I hope this helps, >>>>> Tim >>>>> >>>>> >>>>> >>>>> >>>>> From: Eduardo Dalcin <edalcin at jbrj.org> >>>>> Date: Thursday 1 September 2016 at 15:19 >>>>> >>>>> To: Tim Robertson <trobertson at gbif.org> >>>>> Cc: "api-users at lists.gbif.org" <api-users at lists.gbif.org> >>>>> Subject: Re: [API-users] Changes in GBIF.org and API >>>>> >>>>> Hi Tim, Thanks for the prompt reply. Yes, I'm aware of the KEY >>>>> parameter. My comment is that at the filter, for humans that are not aware >>>>> of those "obscure codes", still no way to select upper taxonomic ranks but >>>>> species, through scientific name. Am I right? >>>>> >>>>> Eduardo >>>>> >>>>> >>>>> -------------------------------- >>>>> *Eduardo Dalcin <http://eduardo.dalc.in>* >>>>> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >>>>> Diretoria de Pesquisas >>>>> e-mail: edalcin at jbrj.org >>>>> Trabalho / Work: +55 21 3204 2116 >>>>> WhatsApp / Telegram: +55 21 98393 3344 >>>>> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >>>>> -------------------------------- >>>>> >>>>> On Thu, Sep 1, 2016 at 10:12 AM, Tim Robertson <trobertson at gbif.org> >>>>> wrote: >>>>> >>>>>> Hi Eduardo, >>>>>> >>>>>> I hope you are well. I?m not sure I understand your comment I?m >>>>>> afraid. >>>>>> Taxonomic filters have been working in GBIF since 2007 and they can >>>>>> be combined with any other filters. They are the most used search >>>>>> filters, >>>>>> which all species pages link to. >>>>>> >>>>>> Plants: http://www.gbif.org/occurrence/search?TAXON_KEY=6 or >>>>>> http://api.gbif.org/v1/occurrence/search?TAXON_KEY=6 >>>>>> Animals: http://www.gbif.org/occurrence/search?TAXON_KEY=1 or >>>>>> http://api.gbif.org/v1/occurrence/search?TAXON_KEY=1 >>>>>> >>>>>> I presume you mean something else though - can you please explain and >>>>>> I?ll try and help? >>>>>> >>>>>> Thanks, >>>>>> Tim >>>>>> >>>>>> >>>>>> >>>>>> From: Eduardo Dalcin <edalcin at jbrj.org> >>>>>> Date: Thursday 1 September 2016 at 14:55 >>>>>> To: Tim Robertson <trobertson at gbif.org> >>>>>> Cc: "api-users at lists.gbif.org" <api-users at lists.gbif.org> >>>>>> Subject: Re: [API-users] Changes in GBIF.org and API >>>>>> >>>>>> Congrats folks! Great job! >>>>>> >>>>>> Still no way to separate plants of animals, or I missing something? >>>>>> >>>>>> Cheers >>>>>> >>>>>> Eduardo >>>>>> >>>>>> >>>>>> -------------------------------- >>>>>> *Eduardo Dalcin <http://eduardo.dalc.in>* >>>>>> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >>>>>> Diretoria de Pesquisas >>>>>> e-mail: edalcin at jbrj.org >>>>>> Trabalho / Work: +55 21 3204 2116 >>>>>> WhatsApp / Telegram: +55 21 98393 3344 >>>>>> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >>>>>> -------------------------------- >>>>>> >>>>>> On Thu, Sep 1, 2016 at 8:55 AM, Tim Robertson <trobertson at gbif.org> >>>>>> wrote: >>>>>> >>>>>>> Hi folks, >>>>>>> >>>>>>> I am very happy to let you know that a new release of GBIF.org went >>>>>>> online at lunchtime today with the following enhancements: >>>>>>> >>>>>>> *Occurrence search (http://www.gbif.org/occurrence/search >>>>>>> <http://www.gbif.org/occurrence/search>):* >>>>>>> >>>>>>> - New locality based filters: >>>>>>> - locality, province/state and water body >>>>>>> - These are not interpreted terms, but allow search based on >>>>>>> what publishers state >>>>>>> - http://www.gbif.org/occurrence/search?STATE_PROVINCE=Califor >>>>>>> nia >>>>>>> - http://www.gbif.org/occurrence/search?WATER_BODY=AMAZONAS+BA >>>>>>> SIN%2C+RIO+JURUA >>>>>>> - A new organismID filter >>>>>>> - http://www.gbif.org/occurrence/search?ORGANISM_ID=100 >>>>>>> - Publishing protocol filter >>>>>>> - http://www.gbif.org/occurrence/search?PROTOCOL=TAPIR >>>>>>> - License filter and facet: >>>>>>> - http://www.gbif.org/occurrence/search?license=CC_BY_4_0 >>>>>>> - The occurrence API supports all the filters mentioned above >>>>>>> with the addition of also allowing search by publishing organisation >>>>>>> >>>>>>> *Occurrence downloads*: >>>>>>> >>>>>>> - The rights.txt file: has been changed to list all the licenses >>>>>>> of datasets included in that download. >>>>>>> - DwC-A based downloads and the Datacite metada (DOIs) use the >>>>>>> most restrictive license of the datasets included in the download >>>>>>> defaulting to CC-BY. >>>>>>> - The CSV downloads contain a new column ?*License*?. >>>>>>> >>>>>>> The *Dataset search page* now supports faceted navigation by >>>>>>> license: http://www.gbif.org/dataset/search?license=CC_BY_4_0 >>>>>>> >>>>>>> In the release, we have temporarily broken the ?*repatriation*? >>>>>>> filter which is being re-enabled now, and will be online again tomorrow. >>>>>>> Sorry about this partial outage of that search term. >>>>>>> >>>>>>> Many thanks, >>>>>>> Tim >>>>>>> >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> API-users mailing list >>>>>>> API-users at lists.gbif.org >>>>>>> http://lists.gbif.org/mailman/listinfo/api-users >>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >>> _______________________________________________ >>> API-users mailing list >>> API-users at lists.gbif.org >>> http://lists.gbif.org/mailman/listinfo/api-users >>> >>> >> >> >> -- >> Dr. Mauro J. Cavalcanti >> E-mail: maurobio at gmail.com >> Web: http://sites.google.com/site/maurobio >> > > -- Dr. Mauro J. Cavalcanti E-mail: maurobio at gmail.com Web: http://sites.google.com/site/maurobio -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.gbif.org/pipermail/api-users/attachments/20160901/4738e19b/attachment-0001.html> -------------- next part -------------- A non-text attachment was scrubbed... Name: image.png Type: image/png Size: 6984 bytes Desc: not available URL: <http://lists.gbif.org/pipermail/api-users/attachments/20160901/4738e19b/attachment-0001.png>
