Thanks Mauro. The point is that I want to use the web interface provided by GBIF.
Best Eduardo -------------------------------- *Eduardo Dalcin <http://eduardo.dalc.in>* Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ Diretoria de Pesquisas e-mail: edalcin at jbrj.org Trabalho / Work: +55 21 3204 2116 WhatsApp / Telegram: +55 21 98393 3344 Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> -------------------------------- On Thu, Sep 1, 2016 at 11:16 AM, Mauro Cavalcanti <maurobio at gmail.com> wrote: > Here is how to achieve this using Python/pygbif (what else? ;-)) > > from pprint import pprint > from pygbif import species, occurrences > > taxon_name = "Plantae" # a kingdom level taxon > taxon_rank = "kingdom" > > key = species.name_backbone(name=taxon_name, rank=taxon_rank)["usageKey"] > n = occurrences.count(taxonKey=key, isGeoreferenced=True) > print format(n, ','), " record(s) for ", taxon_name > > max = 5 # maximum number of records to retrieve > results = occurrences.search(taxonKey=key, basisOfRecord="PRESERVED_SPECIMEN", > hasCoordinate=True, limit=max) > for x in results["results"]: > print pprint(x) # results are returned in JSON format > > Hope it helps. > > Salud! > > 2016-09-01 10:28 GMT-03:00 Eduardo Dalcin <edalcin at jbrj.org>: > >> Oops: http://www.gbif.org/occurrence/search?taxon_key=Planta >> e&basis_of_record=PRESERVED_SPECIMEN >> >> >> -------------------------------- >> *Eduardo Dalcin <http://eduardo.dalc.in>* >> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >> Diretoria de Pesquisas >> e-mail: edalcin at jbrj.org >> Trabalho / Work: +55 21 3204 2116 >> WhatsApp / Telegram: +55 21 98393 3344 >> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >> -------------------------------- >> >> On Thu, Sep 1, 2016 at 10:27 AM, Eduardo Dalcin <edalcin at jbrj.org> wrote: >> >>> That's it! Thanks! >>> >>> I don't get this: >>> [image: Inline image 1] >>> >>> >>> -------------------------------- >>> *Eduardo Dalcin <http://eduardo.dalc.in>* >>> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >>> Diretoria de Pesquisas >>> e-mail: edalcin at jbrj.org >>> Trabalho / Work: +55 21 3204 2116 >>> WhatsApp / Telegram: +55 21 98393 3344 >>> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >>> -------------------------------- >>> >>> On Thu, Sep 1, 2016 at 10:23 AM, Tim Robertson <trobertson at gbif.org> >>> wrote: >>> >>>> Thanks Eduardo. >>>> >>>> No, you can type ?Plantae? or any higher taxa in the scientific name >>>> filter and it will assist with autocompletion. >>>> >>>> I hope this helps, >>>> Tim >>>> >>>> >>>> >>>> >>>> From: Eduardo Dalcin <edalcin at jbrj.org> >>>> Date: Thursday 1 September 2016 at 15:19 >>>> >>>> To: Tim Robertson <trobertson at gbif.org> >>>> Cc: "api-users at lists.gbif.org" <api-users at lists.gbif.org> >>>> Subject: Re: [API-users] Changes in GBIF.org and API >>>> >>>> Hi Tim, Thanks for the prompt reply. Yes, I'm aware of the KEY >>>> parameter. My comment is that at the filter, for humans that are not aware >>>> of those "obscure codes", still no way to select upper taxonomic ranks but >>>> species, through scientific name. Am I right? >>>> >>>> Eduardo >>>> >>>> >>>> -------------------------------- >>>> *Eduardo Dalcin <http://eduardo.dalc.in>* >>>> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >>>> Diretoria de Pesquisas >>>> e-mail: edalcin at jbrj.org >>>> Trabalho / Work: +55 21 3204 2116 >>>> WhatsApp / Telegram: +55 21 98393 3344 >>>> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >>>> -------------------------------- >>>> >>>> On Thu, Sep 1, 2016 at 10:12 AM, Tim Robertson <trobertson at gbif.org> >>>> wrote: >>>> >>>>> Hi Eduardo, >>>>> >>>>> I hope you are well. I?m not sure I understand your comment I?m >>>>> afraid. >>>>> Taxonomic filters have been working in GBIF since 2007 and they can be >>>>> combined with any other filters. They are the most used search filters, >>>>> which all species pages link to. >>>>> >>>>> Plants: http://www.gbif.org/occurrence/search?TAXON_KEY=6 or >>>>> http://api.gbif.org/v1/occurrence/search?TAXON_KEY=6 >>>>> Animals: http://www.gbif.org/occurrence/search?TAXON_KEY=1 or >>>>> http://api.gbif.org/v1/occurrence/search?TAXON_KEY=1 >>>>> >>>>> I presume you mean something else though - can you please explain and >>>>> I?ll try and help? >>>>> >>>>> Thanks, >>>>> Tim >>>>> >>>>> >>>>> >>>>> From: Eduardo Dalcin <edalcin at jbrj.org> >>>>> Date: Thursday 1 September 2016 at 14:55 >>>>> To: Tim Robertson <trobertson at gbif.org> >>>>> Cc: "api-users at lists.gbif.org" <api-users at lists.gbif.org> >>>>> Subject: Re: [API-users] Changes in GBIF.org and API >>>>> >>>>> Congrats folks! Great job! >>>>> >>>>> Still no way to separate plants of animals, or I missing something? >>>>> >>>>> Cheers >>>>> >>>>> Eduardo >>>>> >>>>> >>>>> -------------------------------- >>>>> *Eduardo Dalcin <http://eduardo.dalc.in>* >>>>> Instituto de Pesquisas Jardim Bot?nico do Rio de Janeiro - JBRJ >>>>> Diretoria de Pesquisas >>>>> e-mail: edalcin at jbrj.org >>>>> Trabalho / Work: +55 21 3204 2116 >>>>> WhatsApp / Telegram: +55 21 98393 3344 >>>>> Portal de Dados do JBRJ/DIPEQ <http://dados.jbrj.gov.br/> >>>>> -------------------------------- >>>>> >>>>> On Thu, Sep 1, 2016 at 8:55 AM, Tim Robertson <trobertson at gbif.org> >>>>> wrote: >>>>> >>>>>> Hi folks, >>>>>> >>>>>> I am very happy to let you know that a new release of GBIF.org went >>>>>> online at lunchtime today with the following enhancements: >>>>>> >>>>>> *Occurrence search (http://www.gbif.org/occurrence/search >>>>>> <http://www.gbif.org/occurrence/search>):* >>>>>> >>>>>> - New locality based filters: >>>>>> - locality, province/state and water body >>>>>> - These are not interpreted terms, but allow search based on >>>>>> what publishers state >>>>>> - http://www.gbif.org/occurrence/search?STATE_PROVINCE=Califor >>>>>> nia >>>>>> - http://www.gbif.org/occurrence/search?WATER_BODY=AMAZONAS+BA >>>>>> SIN%2C+RIO+JURUA >>>>>> - A new organismID filter >>>>>> - http://www.gbif.org/occurrence/search?ORGANISM_ID=100 >>>>>> - Publishing protocol filter >>>>>> - http://www.gbif.org/occurrence/search?PROTOCOL=TAPIR >>>>>> - License filter and facet: >>>>>> - http://www.gbif.org/occurrence/search?license=CC_BY_4_0 >>>>>> - The occurrence API supports all the filters mentioned above >>>>>> with the addition of also allowing search by publishing organisation >>>>>> >>>>>> *Occurrence downloads*: >>>>>> >>>>>> - The rights.txt file: has been changed to list all the licenses >>>>>> of datasets included in that download. >>>>>> - DwC-A based downloads and the Datacite metada (DOIs) use the >>>>>> most restrictive license of the datasets included in the download >>>>>> defaulting to CC-BY. >>>>>> - The CSV downloads contain a new column ?*License*?. >>>>>> >>>>>> The *Dataset search page* now supports faceted navigation by >>>>>> license: http://www.gbif.org/dataset/search?license=CC_BY_4_0 >>>>>> >>>>>> In the release, we have temporarily broken the ?*repatriation*? >>>>>> filter which is being re-enabled now, and will be online again tomorrow. >>>>>> Sorry about this partial outage of that search term. >>>>>> >>>>>> Many thanks, >>>>>> Tim >>>>>> >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> API-users mailing list >>>>>> API-users at lists.gbif.org >>>>>> http://lists.gbif.org/mailman/listinfo/api-users >>>>>> >>>>>> >>>>> >>>> >>> >> >> _______________________________________________ >> API-users mailing list >> API-users at lists.gbif.org >> http://lists.gbif.org/mailman/listinfo/api-users >> >> > > > -- > Dr. Mauro J. Cavalcanti > E-mail: maurobio at gmail.com > Web: http://sites.google.com/site/maurobio > -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.gbif.org/pipermail/api-users/attachments/20160901/76dea5cc/attachment-0001.html> -------------- next part -------------- A non-text attachment was scrubbed... Name: image.png Type: image/png Size: 6984 bytes Desc: not available URL: <http://lists.gbif.org/pipermail/api-users/attachments/20160901/76dea5cc/attachment-0001.png>
