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• [aroma.affymetrix] Question: snp list from Affymetirx microarray files Avichai Reich
• [aroma.affymetrix] Error with process function: package sfit not found Mirko Pisati
  • Re: [aroma.affymetrix] Error with process function: package sfit not found Henrik Bengtsson
  • Re: [aroma.affymetrix] Error with process function: package sfit not found Mirko Pisati
• [aroma.affymetrix] cant get aroma to load Sreya Mukherjee
  • [aroma.affymetrix] Re: cant get aroma to load Pierre Neuvial
• [aroma.affymetrix] writeRegions of poor SNP6 arrays failed thomas . grombacher
• [aroma.affymetrix] CalMaTe model fitting error thomas . grombacher
  • [aroma.affymetrix] Re: CalMaTe model fitting error thomas . grombacher
  • Re: [aroma.affymetrix] Re: CalMaTe model fitting error Henrik Bengtsson
• [aroma.affymetrix] GcRMaBackgroundCorrection problem with HTA2.0 Angel Rubio
• [aroma.affymetrix] RmaPlm and ExonRmaPlm Sanjeev Sariya
  • [aroma.affymetrix] Re: RmaPlm and ExonRmaPlm Sanjeev Sariya
• [aroma.affymetrix] CytoscanHD array cdf file for b38/hg38 Phuc Hoang
• Re: [aroma.affymetrix] Error using RMA Pabita Saud
  • Re: [aroma.affymetrix] Error using RMA Henrik Bengtsson
  • Re: [aroma.affymetrix] Error using RMA Pabita Saud
• [aroma.affymetrix] Error writing to connection Karyn Meltz Steinberg
  • Re: [aroma.affymetrix] Error writing to connection Henrik Bengtsson
  • Re: [aroma.affymetrix] Error writing to connection Karyn Meltz Steinberg
• [aroma.affymetrix] object csC not found ali jan
• [aroma.affymetrix] Using Perl script to create flat file PS
• [aroma.affymetrix] CbsModel or writeRegions error Emanuel Gonçalves
  • Re: [aroma.affymetrix] CbsModel or writeRegions error Henrik Bengtsson
  • Re: [aroma.affymetrix] CbsModel or writeRegions error Emanuel Gonçalves
  • Re: [aroma.affymetrix] CbsModel or writeRegions error Henrik Bengtsson
  • Re: [aroma.affymetrix] CbsModel or writeRegions error Emanuel Gonçalves
  • Re: [aroma.affymetrix] CbsModel or writeRegions error Henrik Bengtsson
• [aroma.affymetrix] CBS input dataframe Emanuel Gonçalves
  • Re: [aroma.affymetrix] CBS input dataframe Henrik Bengtsson
  • Re: [aroma.affymetrix] CBS input dataframe Emanuel Gonçalves
  • Re: [aroma.affymetrix] CBS input dataframe Emanuel Gonçalves
  • Re: [aroma.affymetrix] CBS input dataframe Henrik Bengtsson
  • Re: [aroma.affymetrix] CBS input dataframe Emanuel Gonçalves
  • Re: [aroma.affymetrix] CBS input dataframe Emanuel Gonçalves
• [aroma.affymetrix] CalMaTe running error with function "divideBy" Qingyao Huang
• [aroma.affymetrix] Gene ST array summarisation by probeset? Sophie Marion de Procé
• [aroma.affymetrix] AffymetrixCdfFile$byChipType -- Argument 'nbrOfUnits' contains 1 NA value(s) Sophie Marion de Procé
  • RE: [aroma.affymetrix] AffymetrixCdfFile$byChipType -- Argument 'nbrOfUnits' contains 1 NA value(s) Hooiveld, Guido
  • Re: [aroma.affymetrix] AffymetrixCdfFile$byChipType -- Argument 'nbrOfUnits' contains 1 NA value(s) Sophie Marion de Procé
• [aroma.affymetrix] aroma.affymetrix 3.1.0 release Henrik Bengtsson
• [aroma.affymetrix] How to extract .CEL files from .DTT file Renuka Kandhaya Pillai
  • [aroma.affymetrix] Re: How to extract .CEL files from .DTT file Guido
  • [aroma.affymetrix] Re: How to extract .CEL files from .DTT file Renuka Kandhaya Pillai
• [aroma.affymetrix] Error while setting up AffymetrixCelSet Marijke VAN MOERBEKE
  • Re: [aroma.affymetrix] Error while setting up AffymetrixCelSet Henrik Bengtsson
• [aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0 thomas . grombacher
  • Re: [aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0 Henrik Bengtsson
  • AW: [aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0 Thomas Grombacher
  • Re: [aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0 Henrik Bengtsson
• [aroma.affymetrix] Using aroma.affymetrix to perform QC Bernard Omolo
• [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError' roman.hillje via aroma.affymetrix
  • Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError' Henrik Bengtsson
  • Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError' roman.hillje via aroma.affymetrix
  • Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError' Henrik Bengtsson
  • Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError' Henrik Bengtsson
  • Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError' roman.hillje via aroma.affymetrix
  • Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError' Henrik Bengtsson
• [aroma.affymetrix] Running multiple pairs through Paired PSCBS Gaius Augustus
  • [aroma.affymetrix] Re: Running multiple pairs through Paired PSCBS Amy Sherborne
• [aroma.affymetrix] "Error: Failed to retrieve genome information" + paired samples Gaius Augustus
  • Re: [aroma.affymetrix] "Error: Failed to retrieve genome information" + paired samples Henrik Bengtsson
• [aroma.affymetrix] Incorporating Tumor Purity for ASCRMA / PSCBS Kevin McCormick
  • Re: [aroma.affymetrix] Incorporating Tumor Purity for ASCRMA / PSCBS Henrik Bengtsson
• [aroma.affymetrix] GcRmaBackgroundCorrection Krzysztof
• [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median C.C.
  • Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median Henrik Bengtsson
  • Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median C.C.
  • Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median Henrik Bengtsson
  • Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median Henrik Bengtsson
  • Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median C.C.
  • Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median Henrik Bengtsson
• [aroma.affymetrix] Extracting probe level intensities sanj
  • Re: [aroma.affymetrix] Extracting probe level intensities Henrik Bengtsson
• [aroma.affymetrix] Error: object 'csC' not found. wxpyzr
  • Re: [aroma.affymetrix] Error: object 'csC' not found. Henrik Bengtsson
  • Re: [aroma.affymetrix] Error: object 'csC' not found. ali jan
  • Re: [aroma.affymetrix] Error: object 'csC' not found. Henrik Bengtsson
  • Re: [aroma.affymetrix] Error: object 'csC' not found. 321bixin
  • Re: [aroma.affymetrix] Error: object 'csC' not found. Henrik Bengtsson
  • Re: [aroma.affymetrix] Error: object 'csC' not found. 321bixin
• [aroma.affymetrix] aroma.affymetrix 3.0.0 release (10 years today!) - now with parallel processing Henrik Bengtsson
• [aroma.affymetrix] Dealing with batches Peter Savas
  • Re: [aroma.affymetrix] Dealing with batches Pierre Neuvial
  • Re: [aroma.affymetrix] Dealing with batches Peter Savas
• [aroma.affymetrix] aroma.affymetrix v2.14.0 released Henrik Bengtsson
• [aroma.affymetrix] segmented copy number to 'per gene' calls thomas . grombacher
• [aroma.affymetrix] "How to: Create a CDF file from Bioconductor Platform Design (PD) Info package" is miserably failing Guillaume Devailly
  • Re: [aroma.affymetrix] "How to: Create a CDF file from Bioconductor Platform Design (PD) Info package" is miserably failing Henrik Bengtsson
  • Re: [aroma.affymetrix] "How to: Create a CDF file from Bioconductor Platform Design (PD) Info package" is miserably failing Guillaume Devailly
• [aroma.affymetrix] Analysis of the HTA 2.0 Data Marijke Van Moerbeke
• [aroma.affymetrix] Filtering in FIRMA Marijke Van Moerbeke
  • Re: [aroma.affymetrix] Filtering in FIRMA Henrik Bengtsson
• [aroma.affymetrix] Implementation of DABG for HTAv2 Angel Rubio
• [aroma.affymetrix] MeDIP pipeline? bruce moran
  • [aroma.affymetrix] Re: MeDIP pipeline? Guillaume Devailly
• [aroma.affymetrix] Affymetrix HuGene exon expression values / splicing rene.rotterdam
• [aroma.affymetrix] Getting error with AffymetrixCdfFile$fromChipType command anarayan
  • Re: [aroma.affymetrix] Getting error with AffymetrixCdfFile$fromChipType command Henrik Bengtsson
• [aroma.affymetrix] doCRMAv2 vs individual normalization steps Arshi Arora
  • Re: [aroma.affymetrix] doCRMAv2 vs individual normalization steps Henrik Bengtsson
• [aroma.affymetrix] HuEx-1_0-st-v2 gcRMA Tim Sweeney
  • [aroma.affymetrix] Re: HuEx-1_0-st-v2 gcRMA Tim Sweeney
• [aroma.affymetrix] mufColumns on genes with more than 500 probes across the gene Iain
  • Re: [aroma.affymetrix] mufColumns on genes with more than 500 probes across the gene Mark Robinson
• [aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix sanjana
  • Re: [aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix Henrik Bengtsson
  • Re: [aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix sanj
  • Re: [aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix Henrik Bengtsson
• [aroma.affymetrix] cfit error while doCRMAv2 arshi
  • Re: [aroma.affymetrix] cfit error while doCRMAv2 Henrik Bengtsson
  • Re: [aroma.affymetrix] cfit error while doCRMAv2 arshi
  • Re: [aroma.affymetrix] cfit error while doCRMAv2 Henrik Bengtsson
  • Re: [aroma.affymetrix] cfit error while doCRMAv2 Henrik Bengtsson
  • Re: [aroma.affymetrix] cfit error while doCRMAv2 Arshi Arora
  • Re: [aroma.affymetrix] cfit error while doCRMAv2 Henrik Bengtsson
• [aroma.affymetrix] extract LRR and BAF from ACNE results hongen xu
  • Re: [aroma.affymetrix] extract LRR and BAF from ACNE results Henrik Bengtsson
  • Re: [aroma.affymetrix] extract LRR and BAF from ACNE results hongen xu
• [aroma.affymetrix] Adjusting for sample-specific median signal prior to segmentation Benilton Carvalho
  • Re: [aroma.affymetrix] Adjusting for sample-specific median signal prior to segmentation Henrik Bengtsson
• [aroma.affymetrix] from doASCRMAv2 to extractTotalAndFreqB Georg
  • [aroma.affymetrix] Re: from doASCRMAv2 to extractTotalAndFreqB Georg
• [aroma.affymetrix] Error when calling doCRMAv2 Georg
  • Re: [aroma.affymetrix] Error when calling doCRMAv2 Henrik Bengtsson
• [aroma.affymetrix] brainarray ENSG or ENST to perform FIRMA Rishi Das Roy
• [aroma.affymetrix] annotation file update Francois
  • Re: [aroma.affymetrix] annotation file update Henrik Bengtsson
• [aroma.affymetrix] Error when running PSCBS Chengyu Liu
• [aroma.affymetrix] strange result from PSCBS Chengyu Liu
  • [aroma.affymetrix] Re: strange result from PSCBS Chengyu Liu
  • Re: [aroma.affymetrix] Re: strange result from PSCBS Henrik Bengtsson
  • Re: [aroma.affymetrix] Re: strange result from PSCBS Chengyu Liu
  • Re: [aroma.affymetrix] Re: strange result from PSCBS Henrik Bengtsson
  • Re: [aroma.affymetrix] Re: strange result from PSCBS Chengyu Liu
  • Re: [aroma.affymetrix] Re: strange result from PSCBS Henrik Bengtsson
  • Re: [aroma.affymetrix] Re: strange result from PSCBS Henrik Bengtsson
• [aroma.affymetrix] Don't go until... elsa . chacko
• [aroma.affymetrix] Errors occurred in the PSCBS analysis Chengyu Liu
  • Re: [aroma.affymetrix] Errors occurred in the PSCBS analysis Henrik Bengtsson
  • Re: [aroma.affymetrix] Errors occurred in the PSCBS analysis Chengyu Liu
• [aroma.affymetrix] After running doCRMAv2, I got chromosome 24,25 Chengyu Liu
  • Re: [aroma.affymetrix] After running doCRMAv2, I got chromosome 24,25 Henrik Bengtsson
  • Re: [aroma.affymetrix] After running doCRMAv2, I got chromosome 24,25 Chengyu Liu
• [aroma.affymetrix] Does exportTotalCnRatioSet function calculate Allelic-specific copy numbers ? Chengyu Liu
  • [aroma.affymetrix] Re: Does exportTotalCnRatioSet function calculate Allelic-specific copy numbers ? Chengyu Liu
• [aroma.affymetrix] fit CBS model error Jerry Liu
  • Re: [aroma.affymetrix] fit CBS model error Henrik Bengtsson
  • Re: [aroma.affymetrix] fit CBS model error Jerry Liu
  • Re: [aroma.affymetrix] fit CBS model error Henrik Bengtsson
  • Re: [aroma.affymetrix] fit CBS model error Jerry Liu
  • Re: [aroma.affymetrix] fit CBS model error Henrik Bengtsson
• [aroma.affymetrix] aroma.affymetrix v2.13.0 released Henrik Bengtsson
• [aroma.affymetrix] Questions on extracting probeset summaries Qingzhou Zhang
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Henrik Bengtsson
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Qingzhou Zhang
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Henrik Bengtsson
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Qingzhou Zhang
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Henrik Bengtsson
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Henrik Bengtsson
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Henrik Bengtsson
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Henrik Bengtsson
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Qingzhou Zhang
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Henrik Bengtsson
  • Re: [aroma.affymetrix] Questions on extracting probeset summaries Qingzhou Zhang
• [aroma.affymetrix] sfit Juanjo Lozano
  • Re: [aroma.affymetrix] sfit Henrik Bengtsson
  • Re: [aroma.affymetrix] sfit Juanjo Lozano
  • [aroma.affymetrix] Re: sfit Chengyu Liu
• [aroma.affymetrix] Regarding the copy number states and further processing Sam Padmanabhuni
  • [aroma.affymetrix] Re: Regarding the copy number states and further processing Chengyu Liu
  • [aroma.affymetrix] Re: Regarding the copy number states and further processing Sam Padmanabhuni
  • [aroma.affymetrix] Re: Regarding the copy number states and further processing Chengyu Liu
  • [aroma.affymetrix] Re: Regarding the copy number states and further processing Sam Padmanabhuni
  • [aroma.affymetrix] Re: Regarding the copy number states and further processing Chengyu Liu
  • [aroma.affymetrix] Re: Regarding the copy number states and further processing Sam Padmanabhuni
  • [aroma.affymetrix] Re: Regarding the copy number states and further processing Chengyu Liu
  • Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing Henrik Bengtsson
  • Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing Sam Padmanabhuni
  • Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing Chengyu Liu
  • Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing Sam Padmanabhuni
  • Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing Chengyu Liu
  • Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing Sam Padmanabhuni
• [aroma.affymetrix] Regarding vignette about How to: Calculate total copy number ratios from from total (non-polymorphic Chengyu Liu
• [aroma.affymetrix] How to smooth after CRMAv2 and before CBS using PSCBS Chengyu Liu
• [aroma.affymetrix] Is it necessary to update annotation files (CytoscanHD array) Chengyu Liu
  • Re: [aroma.affymetrix] Is it necessary to update annotation files (CytoscanHD array) Henrik Bengtsson
  • Re: [aroma.affymetrix] Is it necessary to update annotation files (CytoscanHD array) Chengyu Liu
• [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Amon
  • Re: [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Henrik Bengtsson
  • Re: [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Amon
  • Re: [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Henrik Bengtsson
  • Re: [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Amon
  • Re: [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Henrik Bengtsson
  • Re: [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Amon
  • Re: [aroma.affymetrix] RmaBackgroundCorrection: error on v4-to-v3-converted HuEx-1_0-st-v2 CEL file Henrik Bengtsson
• [aroma.affymetrix] Could not loacate CystoScanHD_Array annotation Chengyu Liu
  • [aroma.affymetrix] Re: Could not loacate CystoScanHD_Array annotation Chengyu Liu
  • Re: [aroma.affymetrix] Could not loacate CystoScanHD_Array annotation Henrik Bengtsson
  • Re: [aroma.affymetrix] Could not loacate CystoScanHD_Array annotation Chengyu Liu

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