Hi Henrik,
I am unable to read the SNP5 ugp and ufl files.
gi<-getGenomeInformation(cdf)
Error in list(`getGenomeInformation(cdf)` = <environment>,
`getGenomeInformation.AffymetrixCdfFile(cdf)` = <environment>, :
[2009-02-11 17:40:50] Exception: Failed to retrieve genome information
for this chip type: GenomeWideSNP_5
at throw(Exception(...))
at throw.default("Failed to retrieve genome information for this
chip type: ", chipType)
at throw("Failed to retrieve genome information for this chip type:
", chipType)
at getGenomeInformation.AffymetrixCdfFile(cdf)
at getGenomeInformation(cdf)
si<-getSnpInformation(cdf)
Defining DChipSnpInformation from chip type...
Chip type: GenomeWideSNP_5
Version:
Located pathname:
Defining DChipSnpInformation from chip type...done
Error in list(`getSnpInformation(cdf)` = <environment>,
`getSnpInformation.AffymetrixCdfFile(cdf)` = <environment>, :
[2009-02-11 17:20:56] Exception: Failed to retrieve SNP information
for this chip type: GenomeWideSNP_5
at throw(Exception(...))
at throw.default("Failed to retrieve SNP information for this chip
type: ", chipType)
at throw("Failed to retrieve SNP information for this chip type: ",
chipType)
at getSnpInformation.AffymetrixCdfFile(cdf)
at getSnpInformation(cdf
I have no problems with the 500K dataset so it is probably not due to
my installation. Any help would be greatly appreciated.
Sincerely,
Mow
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