aroma-affymetrix
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[aroma.affymetrix] segmentation fault while running a paired analysis on 6.0 arrays
gunes gundem
[aroma.affymetrix] how to find the copy number for gene?
Sukhbir Rattan
[aroma.affymetrix] Re: how to find the copy number for gene?
Henrik Bengtsson
[aroma.affymetrix] Re: how to find the copy number for gene?
Sukhbir Rattan
[aroma.affymetrix] Re: how to find the copy number for gene?
Henrik Bengtsson
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Henrik Bengtsson
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Diya Vaka
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Henrik Bengtsson
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Mathieu Parent
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
JeromeW
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
JeromeW
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Henrik Bengtsson
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
JeromeW
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Henrik Bengtsson
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
JeromeW
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Henrik Bengtsson
Re: Could not locate a file for this chip type (Was: Re: [aroma.affymetrix] aroma.affymetrix)
Diya Vaka
[aroma.affymetrix] aroma.affymetrix
Diya Vaka
[aroma.affymetrix] aroma.affymetrix
Diya Vaka
[aroma.affymetrix] Exception: Could not locate a file for this chip type: GenomeWideSNP_5
Max Moldovan
[aroma.affymetrix] Re: Exception: Could not locate a file for this chip type: GenomeWideSNP_5
Henrik Bengtsson
[aroma.affymetrix] Re: Exception: Could not locate a file for this chip type: GenomeWideSNP_5
Max Moldovan
[aroma.affymetrix] Re: Exception: Could not locate a file for this chip type: GenomeWideSNP_5
Henrik Bengtsson
[aroma.affymetrix] MAT implementation - simple results question
Lavinia Gordon
[aroma.affymetrix] Re: MAT implementation - simple results question
Lavinia
[aroma.affymetrix] scripts for processing and visualization
mbaudis
[aroma.affymetrix] Re: scripts for processing and visualization
Henrik Bengtsson
[aroma.affymetrix] copy number calls in the output
ssv
[aroma.affymetrix] Re: copy number calls in the output
Pierre Neuvial
[aroma.affymetrix] Re: copy number calls in the output
ssv
[aroma.affymetrix] segfault while drawing the plots for a paired analysis following the vignette 5.0/6.0
gunes gundem
[aroma.affymetrix] Re: segfault while drawing the plots for a paired analysis following the vignette 5.0/6.0
Henrik Bengtsson
[aroma.affymetrix] benchmarking CN analysis with aroma.affymetrix (with CBS)
ssv
[aroma.affymetrix] Re: benchmarking CN analysis with aroma.affymetrix (with CBS)
Henrik Bengtsson
[aroma.affymetrix] Re: benchmarking CN analysis with aroma.affymetrix (with CBS)
ssv
[aroma.affymetrix] Re: benchmarking CN analysis with aroma.affymetrix (with CBS)
ssv
[aroma.affymetrix] Re: benchmarking CN analysis with aroma.affymetrix (with CBS)
ssv
[aroma.affymetrix] Starting and Ending Chromosomal Location for Raw Copy Numbers
Suleiman Khan
[aroma.affymetrix] Re: Starting and Ending Chromosomal Location for Raw Copy Numbers
Henrik Bengtsson
[aroma.affymetrix] Re: Starting and Ending Chromosomal Location for Raw Copy Numbers
Suleiman Khan
Re: CbsModel same as CBS in DNAcopy? (Was: Re: [aroma.affymetrix] Re: cbs_error_in_250k_sty_cn_analysis_)
Henrik Bengtsson
Re: CbsModel same as CBS in DNAcopy? (Was: Re: [aroma.affymetrix] Re: cbs_error_in_250k_sty_cn_analysis_)
ssv
[aroma.affymetrix] how to find out genome build version for the annotation files
yupu
[aroma.affymetrix] Re: how to find out genome build version for the annotation files
Henrik Bengtsson
[aroma.affymetrix] Re: how to find out genome build version for the annotation files
yupu
[aroma.affymetrix] cbs_error_in_250k_sty_cn_analysis_
ssv
[aroma.affymetrix] Re: cbs_error_in_250k_sty_cn_analysis_
Henrik Bengtsson
[aroma.affymetrix] Re: cbs_error_in_250k_sty_cn_analysis_
ssv
[aroma.affymetrix] aroma.affymetrix and HTHGU133A microarrays
jbeane
[aroma.affymetrix] Re: aroma.affymetrix and HTHGU133A microarrays
Mark Robinson
[aroma.affymetrix] Re: aroma.affymetrix and HTHGU133A microarrays
jbeane
[aroma.affymetrix] Re: aroma.affymetrix and HTHGU133A microarrays
Mark Robinson
[aroma.affymetrix] Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
tea
[aroma.affymetrix] Re: Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
Mark Robinson
[aroma.affymetrix] Re: Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
tea
[aroma.affymetrix] Re: Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
tea
[aroma.affymetrix] Re: Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
Mark Robinson
[aroma.affymetrix] Re: Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
tea
[aroma.affymetrix] Re: Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
Henrik Bengtsson
[aroma.affymetrix] Re: Question about difference in total number of probesets between affy(rma) and aroma.affymetrix
tea
[aroma.affymetrix] Question about maximum # of probesets from different CDF
tea
[aroma.affymetrix] Re: Question about maximum # of probesets from different CDF
tea
[aroma.affymetrix] Re: Question about maximum # of probesets from different CDF
Henrik Bengtsson
Re: RMAExpress, and DNA/RNA analysis (Was: Re: [aroma.affymetrix] Re: Question about the outcome CEL files)
Henrik Bengtsson
[aroma.affymetrix] Re: Re-run aroma.affymetrix
Mark Robinson
[aroma.affymetrix] RMA of aroma.affymetrix, affyPLM and affy
tea
[aroma.affymetrix] Re: RMA of aroma.affymetrix, affyPLM and affy
Mark Robinson
[aroma.affymetrix] Re: RMA of aroma.affymetrix, affyPLM and affy
tea
[aroma.affymetrix] Soft links in windows
Hilmar Berger
[aroma.affymetrix] Re: Soft links in windows
Henrik Bengtsson
[aroma.affymetrix] Question about RMA and custom CDF
Tanker
[aroma.affymetrix] Re: Question about RMA and custom CDF
Mark Robinson
[aroma.affymetrix] Re: Question about RMA and custom CDF
tea
[aroma.affymetrix] Exception: The fit function for requested RMA PLM flavor failed: affyPLM
Pierre Neuvial
[aroma.affymetrix] Re: Exception: The fit function for requested RMA PLM flavor failed: affyPLM
Mark Robinson
[aroma.affymetrix] Re: Exception: The fit function for requested RMA PLM flavor failed: affyPLM
Pierre Neuvial
[aroma.affymetrix] Warnings after installation
Peng Yu
[aroma.affymetrix] Re: Warnings after installation
Pierre Neuvial
[aroma.affymetrix] Re-run aroma.affymetrix
anbarasu
[aroma.affymetrix] Re: Re-run aroma.affymetrix
Mark Robinson
[aroma.affymetrix] Re: Re-run aroma.affymetrix
Anbarasu L A
[aroma.affymetrix] installation fails
mbaudis
[aroma.affymetrix] Re: installation fails
Henrik Bengtsson
[aroma.affymetrix] Re: installation fails
Mark Robinson
[aroma.affymetrix] Re: installation fails
Henrik Bengtsson
[aroma.affymetrix] Re: installation fails
mbaudis
[aroma.affymetrix] Re: installation fails
mbaudis
[aroma.affymetrix] Re: installation fails
Henrik Bengtsson
[aroma.affymetrix] Re: installation fails
mbaudis
[aroma.affymetrix] Re: installation fails
Henrik Bengtsson
[aroma.affymetrix] Re: installation fails
mbaudis
[aroma.affymetrix] Re: installation fails
Henrik Bengtsson
[aroma.affymetrix] Re: installation fails
mbaudis
[aroma.affymetrix] Re: installation fails
mbaudis
[aroma.affymetrix] Differential expression analysis
Mathieu
[aroma.affymetrix] Re: Differential expression analysis
Mark Robinson
[aroma.affymetrix] MedianNormalization
Cathy Mitchell
[aroma.affymetrix] Re: MedianNormalization
Mark Robinson
[aroma.affymetrix] Re: MedianNormalization
CathyMitchell
[aroma.affymetrix] Re: MedianNormalization
Henrik Bengtsson
Re: [aroma.affymetrix] Re: MedianNormalization
Jean-Paul Abbuehl
Re: [aroma.affymetrix] Re: MedianNormalization
Henrik Bengtsson
Re: [aroma.affymetrix] Re: MedianNormalization
Jean-Paul Abbuehl
[aroma.affymetrix] MedianNormalization
Cathy Mitchell
[aroma.affymetrix] plotDensity - can we add legends?
LABrazil
[aroma.affymetrix] Re: plotDensity - can we add legends?
Mark Robinson
[aroma.affymetrix] Re: plotDensity - can we add legends?
Houtan
[aroma.affymetrix] Re: extractMatrix
Mark Robinson
[aroma.affymetrix] Re: extractMatrix
Hamid Ashrafi
[aroma.affymetrix] Re: CDF creation
Mark Robinson
[aroma.affymetrix] Re: CDF creation
celine.car...@gmail.com
[aroma.affymetrix] Re: CDF creation
Mark Robinson
[aroma.affymetrix] extractMatrix
Hamid
[aroma.affymetrix] CDF creation
Naresh
[aroma.affymetrix] Log2 data
David
[aroma.affymetrix] Re: Log2 data
Pierre Neuvial
[aroma.affymetrix] Re: Log2 data
David
[aroma.affymetrix] Re: Log2 data
Pierre Neuvial
[aroma.affymetrix] Copy numbers using CBS
Suman
[aroma.affymetrix] Re: Copy numbers using CBS
Suman
[aroma.affymetrix] Re: Copy numbers using CBS
Pierre Neuvial
[aroma.affymetrix] Re: Copy numbers using CBS
Pierre Neuvial
[aroma.affymetrix] cRMA v2
ZZ
[aroma.affymetrix] Re: cRMA v2
Pierre Neuvial
[aroma.affymetrix] Re: cRMA v2
Henrik Bengtsson
[aroma.affymetrix] Re: RMAExpress in aroma.affymetrix? (Was: Re: Question about the outcome CEL files)
Henrik Bengtsson
[aroma.affymetrix] Question about the outcome CEL files
Stellaw Chao
[aroma.affymetrix] Re: Question about the outcome CEL files
Henrik Bengtsson
[aroma.affymetrix] Re: Question about the outcome CEL files
Stellaw Chao
[aroma.affymetrix] Discussion on export-to-bioconductor
Alex Morgan
[aroma.affymetrix] Re: Discussion on export-to-bioconductor
Henrik Bengtsson
[aroma.affymetrix] Discussion on using-the-genomegraphs-package-with-firma
JFP
[aroma.affymetrix] Re: Discussion on using-the-genomegraphs-package-with-firma
Mark Robinson
[aroma.affymetrix] Re: Discussion on using-the-genomegraphs-package-with-firma
Henrik Bengtsson
[aroma.affymetrix] Re: Discussion on using-the-genomegraphs-package-with-firma
John Pearson
[aroma.affymetrix] Re: Discussion on using-the-genomegraphs-package-with-firma
Mark Robinson
[aroma.affymetrix] Re: Discussion on using-the-genomegraphs-package-with-firma
Henrik Bengtsson
[aroma.affymetrix] Discussion on using-the-genomegraphs-package-with-firma
SBA
[aroma.affymetrix] Re: Discussion on using-the-genomegraphs-package-with-firma
Henrik Bengtsson
[aroma.affymetrix] Discussion on using-the-genomegraphs-package-with-firma
Lasse
[aroma.affymetrix] Re: Discussion on using-the-genomegraphs-package-with-firma
Mark Robinson
[aroma.affymetrix] downloading CDF files from Affymetrix via NetAffx [was "Mapping10K_Xba131 CDF"]
James F. Reid
[aroma.affymetrix] Re: downloading CDF files from Affymetrix via NetAffx [was "Mapping10K_Xba131 CDF"]
Henrik Bengtsson
[aroma.affymetrix] identifying chip type
mbaudis
[aroma.affymetrix] Re: identifying chip type
mbaudis
[aroma.affymetrix] Re: identifying chip type
Henrik Bengtsson
[aroma.affymetrix] Re: identifying chip type
mbaudis
[aroma.affymetrix] Mapping10K_Xba131 CDF
mbaudis
[aroma.affymetrix] Re: Mapping10K_Xba131 CDF
James F. Reid
[aroma.affymetrix] Re: Mapping10K_Xba131 CDF
mbaudis
[aroma.affymetrix] Calling enriched regions in tiling array experiments
Lars Hennig
[aroma.affymetrix] Re: Calling enriched regions in tiling array experiments
Mark Robinson
[aroma.affymetrix] question on R.oo/R.methodsS3
David Rosenberg
[aroma.affymetrix] Re: question on R.oo/R.methodsS3
Henrik Bengtsson
[aroma.affymetrix] Re: question on R.oo/R.methodsS3
David Rosenberg
[aroma.affymetrix] Migration documentation: Someone with experience Joomla or other CMSs?
Henrik Bengtsson
[aroma.affymetrix] Re: Migration documentation: Someone with experience Joomla or other CMSs?
David Rosenberg
[aroma.affymetrix] Re: Migration documentation: Someone with experience Joomla or other CMSs?
Henrik Bengtsson
[aroma.affymetrix] Reference data for CN analysis
Lavinia Gordon
[aroma.affymetrix] Re: Reference data for CN analysis
Henrik Bengtsson
[aroma.affymetrix] Re: Reference data for CN analysis
Lavinia
[aroma.affymetrix] Re: Reference data for CN analysis
Henrik Bengtsson
[aroma.affymetrix] pooled GWA analysis with aroma.affymetrix and 6.0
marco
[aroma.affymetrix] Re: pooled GWA analysis with aroma.affymetrix and 6.0
Henrik Bengtsson
[aroma.affymetrix] Re: pooled GWA analysis with aroma.affymetrix and 6.0
marco
[aroma.affymetrix] Re: pooled GWA analysis with aroma.affymetrix and 6.0
Henrik Bengtsson
[aroma.affymetrix] re: microarray signal dynamics collaboration
davic...@gmail.com
[aroma.affymetrix] Re: microarray signal dynamics collaboration
Mark Robinson
[aroma.affymetrix] outputting results to IGB?
Josie Clowney
[aroma.affymetrix] Re: outputting results to IGB?
Henrik Bengtsson
[aroma.affymetrix] error with matrixStats package when installing aroma.affymetrix
mortiz
[aroma.affymetrix] Re: error with matrixStats package when installing aroma.affymetrix
Henrik Bengtsson
[aroma.affymetrix] compressed range for gene amplification? compared with other algorithms
han
[aroma.affymetrix] Re: compressed range for gene amplification? compared with other algorithms
Henrik Bengtsson
Re: No CN estimates for SNP 6.0 (Was: Re: [aroma.affymetrix] Re: CNV analys 28 st SNP 6.0 arrays)
Henrik Bengtsson
[aroma.affymetrix] No plot CNV analysis (Myriam)
Myriam Peyrard
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Henrik Bengtsson
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Myriam Peyrard
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Henrik Bengtsson
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Henrik Bengtsson
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Myriam Peyrard
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Henrik Bengtsson
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Myriam Peyrard
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Henrik Bengtsson
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Myriam Peyrard
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Henrik Bengtsson
[aroma.affymetrix] Re: No plot CNV analysis (Myriam)
Myriam Peyrard
[aroma.affymetrix] Question about combining Nsp Sty in 500k SNP chip
han
[aroma.affymetrix] Re: Question about combining Nsp Sty in 500k SNP chip
Henrik Bengtsson
[aroma.affymetrix] Re: Question about combining Nsp Sty in 500k SNP chip
han
[aroma.affymetrix] Re: Question about combining Nsp Sty in 500k SNP chip
Henrik Bengtsson
[aroma.affymetrix] Problem with paired copynumber analysis for SNP6.0
cstratowa
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
Henrik Bengtsson
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
cstratowa
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
Henrik Bengtsson
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
cstratowa
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
James F. Reid
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
Henrik Bengtsson
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
cstratowa
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
cstratowa
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