Hi Jun. Comments below.
On 28/02/2009, at 3:29 AM, Jun wrote: > Hi, > > I try to get help on finding annotation for the cluster id shown in > the cdf files. > For the human exon array, I saw the latest transcript cluster > annotation (.csv) dated as 11/24/08 at the Affymetrix website. The CDF > file I am using is from here and dated as Nov 2007 (core.R3). I > couldn't find either old transcript annotation or the newer cdf files. > Could anyboby give me a direction? Thanks. You will notice that in the "Archived NetAffx Annotation Files" section of: http://www.affymetrix.com/products_services/arrays/specific/exon.affx#1_4 ... you can find the older NetAffx files you need. I did try and do an update last year sometime (July or so) and I noticed that for the Human Exon array, none of the probesets had changed in configuration, so I could've created a new CDF, but it would be identical to the old one. Most of the changes in the NetAffx CSV file were to do with other annotation, such as GO terms and so on. When I get a free moment, I will have a look at the latest probeset CSVs and see whether the probesets have in fact changed. If so, I'll create a new CDF. Either way, you should be ok by using a newer NetAffx annotation CSV with the older CDF. Hope that helps. Cheers, Mark ------------------------------ Mark Robinson Epigenetics Laboratory, Garvan Bioinformatics Division, WEHI e: [email protected] e: [email protected] p: +61 (0)3 9345 2628 f: +61 (0)3 9347 0852 ------------------------------ --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
