aroma-affymetrix
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[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
Henrik Bengtsson
[aroma.affymetrix] Re: Problem with paired copynumber analysis for SNP6.0
cstratowa
[aroma.affymetrix] Gene-Level Summarization of Expression Data
Steve Piccolo
[aroma.affymetrix] Re: Gene-Level Summarization of Expression Data
Steve P
[aroma.affymetrix] Re: Gene-Level Summarization of Expression Data
Mark Robinson
[aroma.affymetrix] Re: Gene-Level Summarization of Expression Data
Mark Robinson
[aroma.affymetrix] Re: Gene-Level Summarization of Expression Data
Randy Gobbel
[aroma.affymetrix] Re: Gene-Level Summarization of Expression Data
Randy Gobbel
Re: [aroma.affymetrix] Re: Gene-Level Summarization of Expression Data
Henrik Bengtsson
[aroma.affymetrix] Re: Gene-Level Summarization of Expression Data
Randy Gobbel
[aroma.affymetrix] Re: CDF files for Affymetrix whole transcript arrays (Gene 1.0, Exon 1.0)
Mark Robinson
[aroma.affymetrix] Re: CNV analys 28 st SNP 6.0 arrays
Myriam Peyrard
[aroma.affymetrix] CNV analys 28 st SNP 6.0 arrays
Myriam
[aroma.affymetrix] Re: CNV analys 28 st SNP 6.0 arrays
Henrik Bengtsson
[aroma.affymetrix] Re: CNV analys 28 st SNP 6.0 arrays
Myriam Peyrard
[aroma.affymetrix] problem in processin FLN file, all thetas = 0
marco
[aroma.affymetrix] Re: problem in processin FLN file, all thetas = 0
Henrik Bengtsson
[aroma.affymetrix] problems installing aroma.affymetrix on a linux machine
Cathy Mitchell
[aroma.affymetrix] Re: problems installing aroma.affymetrix on a linux machine
Henrik Bengtsson
[aroma.affymetrix] segmentation file without ChromosomeExplorer
mbaudis
[aroma.affymetrix] Re: segmentation file without ChromosomeExplorer
Pierre Neuvial
[aroma.affymetrix] SNP6 CNV analysis with Technical replicates
marco
[aroma.affymetrix] Re: SNP6 CNV analysis with Technical replicates
Henrik Bengtsson
[aroma.affymetrix] Re: SNP6 CNV analysis with Technical replicates
marco
[aroma.affymetrix] Re: SNP6 CNV analysis with Technical replicates
Henrik Bengtsson
[aroma.affymetrix] Re: SNP6 CNV analysis with Technical replicates
marco
[aroma.affymetrix] about pgf/clf files
chunjiang he
[aroma.affymetrix] Re: about pgf/clf files
Lakshmanan Iyer
[aroma.affymetrix] Re: about pgf/clf files
chunjiang he
[aroma.affymetrix] Re: about pgf/clf files
Henrik Bengtsson
[aroma.affymetrix] defining cell files
Myriam
[aroma.affymetrix] Re: defining cell files
Pierre Neuvial
[aroma.affymetrix] Re: defining cell files
Pierre Neuvial
[aroma.affymetrix] Re: defining cell files
Myriam Peyrard
[aroma.affymetrix] Re: defining cell files
Henrik Bengtsson
[aroma.affymetrix] Re: Setup of directory structures (Was: Re: hi)
Henrik Bengtsson
[aroma.affymetrix] aroma.affymetrix v1.1.0 released
Henrik Bengtsson
[aroma.affymetrix] FIRMAGene
ettore mosca
[aroma.affymetrix] Re: FIRMAGene
rhizomorph
[aroma.affymetrix] Re: FIRMAGene
ettore
[aroma.affymetrix] Re: FIRMAGene
Mark Robinson
[aroma.affymetrix] Re: FIRMAGene
nmcgli...@googlemail.com
[aroma.affymetrix] Re: FIRMAGene
Mark Robinson
[aroma.affymetrix] Re: FIRMAGene
ettore
[aroma.affymetrix] FIRMAGene
dkny169
[aroma.affymetrix] After low level analysis.
David
[aroma.affymetrix] Re: After low level analysis.
Pierre Neuvial
[aroma.affymetrix] questions about aroma.affymetrix
chunjiang he
[aroma.affymetrix] Re: questions about aroma.affymetrix
Lakshmanan Iyer
[aroma.affymetrix] Re: questions about aroma.affymetrix
chunjiang he
[aroma.affymetrix] Re: questions about aroma.affymetrix
Lakshmanan Iyer
[aroma.affymetrix] Re: questions about aroma.affymetrix
chunjiang he
[aroma.affymetrix] Re: questions about aroma.affymetrix
Elizabeth Purdom
[aroma.affymetrix] Re: questions about aroma.affymetrix
Lakshmanan Iyer
[aroma.affymetrix] Re: questions about aroma.affymetrix
chunjiang he
[aroma.affymetrix] Re: questions about aroma.affymetrix
Lakshmanan Iyer
[aroma.affymetrix] hi
chunjiang he
[aroma.affymetrix] Re: hi
Lakshmanan Iyer
[aroma.affymetrix] hi
chunjiang he
[aroma.affymetrix] accessing CnChipEffectSet
mbaudis
[aroma.affymetrix] Re: accessing CnChipEffectSet
Pierre Neuvial
[aroma.affymetrix] Re: accessing CnChipEffectSet
mbaudis
[aroma.affymetrix] accessing internal functions
Elizabeth Purdom
[aroma.affymetrix] SNPs affecting EXon splicing detection
sabrina
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
Mark Robinson
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
sabrina
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
Mark Robinson
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
sabrina
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
Mark Robinson
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
sabrina
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
Mark Robinson
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
sabrina
[aroma.affymetrix] Re: SNPs affecting EXon splicing detection
Mark Robinson
[aroma.affymetrix] ExonRmaPlm
Steve Pederson
[aroma.affymetrix] Re: ExonRmaPlm
Steve Pederson
[aroma.affymetrix] Quality assessment of Gene ST Array
Cathy Mitchell
[aroma.affymetrix] Re: Quality assessment of Gene ST Array
Mark Robinson
[aroma.affymetrix] Error: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'>
Xinjun Zhang
[aroma.affymetrix] Re: Error: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'>
Xinjun Zhang
[aroma.affymetrix] little mistake at "estimation-of-total-copy-numbers-using-the-crma-v2-method" page?
mako
[aroma.affymetrix] Re: little mistake at "estimation-of-total-copy-numbers-using-the-crma-v2-method" page?
Pierre Neuvial
[aroma.affymetrix] Error Occured When Convertting CDF File
Xinjun Zhang
[aroma.affymetrix] Re: Error Occured When Convertting CDF File
Mark Robinson
[aroma.affymetrix] Re: Error Occured When Convertting CDF File
Xinjun Zhang
[aroma.affymetrix] Re: Error Occured When Convertting CDF File
Mark Robinson
[aroma.affymetrix] Re: Error Occured When Convertting CDF File
Elizabeth Purdom
[aroma.affymetrix] Re: Error Occured When Convertting CDF File
Xinjun Zhang
[aroma.affymetrix] A question about Total Copy Number Analysis (5.0 & 6.0)
jing ma
[aroma.affymetrix] Re: A question about Total Copy Number Analysis (5.0 & 6.0)
Pierre Neuvial
[aroma.affymetrix] R and Aroma_Affymetrix course?
Myriam
[aroma.affymetrix] Re: R and Aroma_Affymetrix course?
Lavinia
[aroma.affymetrix] Re: R and Aroma_Affymetrix course?
Henrik Bengtsson
[aroma.affymetrix] Compare the splicing pattern of two samples
liszt
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Mark Robinson
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Xinjun Zhang
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Mark Robinson
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Xinjun Zhang
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Mark Robinson
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Xinjun Zhang
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Mark Robinson
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Xinjun Zhang
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Mark Robinson
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Xinjun Zhang
[aroma.affymetrix] Re: Compare the splicing pattern of two samples
Mark Robinson
[aroma.affymetrix] Extracting raw data before normalization
anbarasu
[aroma.affymetrix] Re: Extracting raw data before normalization
Mathieu Parent
[aroma.affymetrix] Re: Extracting raw data before normalization
Elizabeth Purdom
[aroma.affymetrix] Re: Extracting raw data before normalization
anbarasu
[aroma.affymetrix] Re: Extracting raw data before normalization
Mark Robinson
[aroma.affymetrix] Re: Extracting raw data before normalization
Mark Robinson
[aroma.affymetrix] How to deal with RAW CEL file?
Xinjun Zhang
[aroma.affymetrix] Re: How to deal with RAW CEL file?
Mark Robinson
[aroma.affymetrix] Re: How to deal with RAW CEL file?
liszt
[aroma.affymetrix] Re: How to deal with RAW CEL file?
Mark Robinson
[aroma.affymetrix] Re: How to deal with RAW CEL file?
Xinjun Zhang
[aroma.affymetrix] Re: How to deal with RAW CEL file?
Mario Fasold
[aroma.affymetrix] Discussion on exploratory-analysis-of-raw-data
CathyMitchell
[aroma.affymetrix] Discussion on download-install
CathyMitchell
[aroma.affymetrix] Re: Discussion on download-install
Mark Robinson
[aroma.affymetrix] Re: Discussion on download-install
Cathy Mitchell
[aroma.affymetrix] Re: Discussion on human-exon-array-analysis
Mark Robinson
[aroma.affymetrix] exon analysis of Human Gene 1.0 ST Array
dbe...@u.washington.edu
[aroma.affymetrix] Re: exon analysis of Human Gene 1.0 ST Array
Mark Robinson
[aroma.affymetrix] Re: exon analysis of Human Gene 1.0 ST Array
ettore
[aroma.affymetrix] Discussion on human-exon-array-analysis
Mathieu
[aroma.affymetrix] HMM implementation
David
[aroma.affymetrix] Re: HMM implementation
Henrik Bengtsson
[aroma.affymetrix] HMM implementation
David
[aroma.affymetrix] view exon effect from intensity plot and FIRMA model
sabrina
[aroma.affymetrix] Re: view exon effect from intensity plot and FIRMA model
Mark Robinson
[aroma.affymetrix] Custom CDF for "MoEx-1_0-stv1"
Khan, Sohail
[aroma.affymetrix] Re: Custom CDF for "MoEx-1_0-stv1"
Khan, Sohail
[aroma.affymetrix] Re: Custom CDF for "MoEx-1_0-stv1"
Mark Robinson
[aroma.affymetrix] How to fit GladModel with a simulated data set
Matt
[aroma.affymetrix] Re: How to fit GladModel with a simulated data set
Henrik Bengtsson
[aroma.affymetrix] Problem using ArrayExplorer with HuEx data
Randy Gobbel
[aroma.affymetrix] Re: Problem using ArrayExplorer with HuEx data
Henrik Bengtsson
[aroma.affymetrix] Problem using Assay Explorer with HuEx data
Randy Gobbel
[aroma.affymetrix] FIRMA score for each transcript
Libing Wang
[aroma.affymetrix] Re: FIRMA score for each transcript
Mark Robinson
[aroma.affymetrix] Re: FIRMA score for each transcript
Libing Wang
[aroma.affymetrix] Re: FIRMA score for each transcript
Mark Robinson
[aroma.affymetrix] Re: FIRMA score for each transcript
Libing Wang
[aroma.affymetrix] Re: FIRMA score for each transcript
Libing Wang
[aroma.affymetrix] Re: FIRMA score for each transcript
Mark Robinson
[aroma.affymetrix] Re: FIRMA score for each transcript
Libing Wang
[aroma.affymetrix] Re: FIRMA score for each transcript
Mark Robinson
Re: [aroma.affymetrix] Re: FIRMA score for each transcript
Libing Wang
Re: [aroma.affymetrix] Re: FIRMA score for each transcript
Libing Wang
Re: [aroma.affymetrix] Re: FIRMA score for each transcript
Mark Robinson
[aroma.affymetrix] Re: FIRMA score for each transcript
PA
[aroma.affymetrix] Posting attachments to the forum
Henrik Bengtsson
[aroma.affymetrix] A new LIMMA background normalization
Angel
[aroma.affymetrix] Re: A new LIMMA background normalization
Henrik Bengtsson
[aroma.affymetrix] Specifying alternate probe level models
Steve Pederson
[aroma.affymetrix] Re: Specifying alternate probe level models
Mark Robinson
[aroma.affymetrix] Re: Specifying alternate probe level models
Steve Pederson
[aroma.affymetrix] Re: Specifying alternate probe level models
Henrik Bengtsson
[aroma.affymetrix] Re: Specifying alternate probe level models
Steve Pederson
[aroma.affymetrix] Discussion on displaying-transforms
Alex Morgan
[aroma.affymetrix] question for using custom Affy Exon array CDF
jing ma
[aroma.affymetrix] Re: question for using custom Affy Exon array CDF
Mark Robinson
[aroma.affymetrix] Re: question for using custom Affy Exon array CDF
jing ma
[aroma.affymetrix] Re: question for using custom Affy Exon array CDF
Elizabeth Purdom
[aroma.affymetrix] 'Packages reordered' warning message
Seagull
[aroma.affymetrix] Re: 'Packages reordered' warning message
Mark Robinson
[aroma.affymetrix] Help with affymetrix gene expression analysis using aroma
JP Mpindi
[aroma.affymetrix] Re: Help with affymetrix gene expression analysis using aroma
Mark Robinson
[aroma.affymetrix] Re: Help with affymetrix gene expression analysis using aroma
JP
[aroma.affymetrix] Re: Help with affymetrix gene expression analysis using aroma
JP
[aroma.affymetrix] trouble running writeRegions on GLAD results from multiple runs
gcutler
[aroma.affymetrix] gcRMA for Gene ST Arrays
Mario Fasold
[aroma.affymetrix] Re: gcRMA for Gene ST Arrays
Mark Robinson
[aroma.affymetrix] Re: gcRMA for Gene ST Arrays
Richard Beyer
[aroma.affymetrix] Re: gcRMA for Gene ST Arrays
Mario Fasold
[aroma.affymetrix] Re: gcRMA for Gene ST Arrays
Mark Robinson
[aroma.affymetrix] Re: gcRMA for Gene ST Arrays
Mario Fasold
[aroma.affymetrix] Write normalized intensities as a CEL file
Libing
[aroma.affymetrix] Re: Write normalized intensities as a CEL file
Mark Robinson
[aroma.affymetrix] Custom CDF Creation
asclepiu...@gmail.com
[aroma.affymetrix] Re: Custom CDF Creation
Mark Robinson
[aroma.affymetrix] output probe-level normalized intensity and residuals for Exon array data
jing
[aroma.affymetrix] Re: output probe-level normalized intensity and residuals for Exon array data
Mark Robinson
[aroma.affymetrix] output probe-level normalized intensity and residuals for Exon array data
jing ma
[aroma.affymetrix] Problem understanding FIRMA
cstratowa
[aroma.affymetrix] Re: Problem understanding FIRMA
Mark Robinson
[aroma.affymetrix] Re: Problem understanding FIRMA
cstratowa
[aroma.affymetrix] Re: Problem understanding FIRMA
Mark Robinson
[aroma.affymetrix] Re: Problem understanding FIRMA
cstratowa
[aroma.affymetrix] Re: Problem understanding FIRMA
cstratowa
[aroma.affymetrix] Re: Problem understanding FIRMA
Mark Robinson
[aroma.affymetrix] Re: Problem understanding FIRMA
cstratowa
[aroma.affymetrix] firma scores
max
[aroma.affymetrix] Re: firma scores
Mark Robinson
[aroma.affymetrix] Interpretation of GLAD results for SNP6.0
cstratowa
[aroma.affymetrix] Re: Interpretation of GLAD results for SNP6.0
stransky
[aroma.affymetrix] Re: Interpretation of GLAD results for SNP6.0
cstratowa
[aroma.affymetrix] aroma.affymetrix error
Ben
[aroma.affymetrix] Re: aroma.affymetrix error
Mark Robinson
[aroma.affymetrix] function: indexOf()
Jun
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