Hi
I am trying to implement the Vignette: Human exon array analysis
posted at http://www.aroma-project.org/node/37.
However when i got to the section discussing how to browse spatial
false-colored images of the residuals,
ae <- ArrayExplorer(rs)
setColorMaps(ae, c("log2,log2neg,rainbow", "log2,log2pos,rainbow"))
process(ae, interleaved="auto", verbose=verbose)
i got the error the EBImage package not loaded.
So i went and installed the EBImage package from bioconductors and now
i get an error stating that i should not have installed this package.
Any help resolving this is very much appreciated?
> sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-pc-linux-gnu
locale:
[1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_AU.UTF-8
[7] LC_PAPER=en_AU.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.10.1
> traceback()
3: stop(gettextf("no methods for '%s' and no documentation for it as a
function",
f), domain = NA)
2: .helpForCall(topicExpr, parent.frame())
1: `?`(EBImage())
Regards
Elsa Chacko
PhD Student
Macquarie University.
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