Hi Sorry I should have posted the error i got :
Loaded EBImage v9.9.9 (2009-09-10). HOWEVER, DO NOT INSTALL THIS PACKAGE. THIS IS AN EMPTY PACKAGE WITH THE SAME NAME AS AN EXISTING BIOC PACKAGE. THE ONLY PURPOSE OF THIS PACKAGE IS TO PREVENT THE R- FORGE BUILD SERVERS TO HALT THE BUILDING OF AROMA.CORE AND AROMA.AFFYMETRIX. THIS DUMMY PACKAGE WILL NOT BE NEEDED WHEN R-FORGE INCLUDES THE REAL EBIMAGE PACKAGE OR SETS R_check_force_suggests=false. Seeing the aroma.affymetrix in the message i wrongly assumed that this is an error message from the aroma package.. Thanks for the assistance Regards Elsa On Nov 16, 4:18 pm, Henrik Bengtsson <henrik.bengts...@aroma- project.org> wrote: > Hi. > > > > On Mon, Nov 15, 2010 at 8:50 PM, Elsa Chacko <elsa.cha...@gmail.com> wrote: > > Hi > > > I am trying to implement the Vignette: Human exon array analysis > > posted athttp://www.aroma-project.org/node/37. > > > However when i got to the section discussing how to browse spatial > > false-colored images of the residuals, > > > ae <- ArrayExplorer(rs) > > setColorMaps(ae, c("log2,log2neg,rainbow", "log2,log2pos,rainbow")) > > process(ae, interleaved="auto", verbose=verbose) > > > i got the error the EBImage package not loaded. > > > So i went and installed the EBImage package from bioconductors and now > > i get an error stating that i should not have installed this package. > > Where does it say you "should not have installed [the EBImage] > package"? I am not sure I understand. > > > > > Any help resolving this is very much appreciated? > > Whatever the error EBImage reports, I believe it is independent of the > aroma.affymetrix et al. packages. Because of this, I recommend that > you troubleshoot this without loading aroma.affymetrix, but instead > start a fresh R session and make sure you can load EBImage, e.g. > > % R --vanilla > [...] > > > library("EBImage"); > > without errors (warnings are ok). If you get errors here, please ask > for further assistance on the Bioconductor mailing list > [http://bioconductor.org/help/mailing-list/], because that is the > place to find people that can help you with EBImage and other > Bioconductor packages. > > Also, it may be that there is not compatible version of EBImage for > your OS/platform. The Bioc experts will let you know if this is the > case. > > > > >> sessionInfo() > > R version 2.10.1 (2009-12-14) > > Your installation of R is nearly one year old and considered obsolete; > I recommend that you also update R to the latest R 2.12.0 (preferably > the patched version). Over at Bioconductor, they'll most likely ask > you to do that. > > Hope this helps > > /Henrik > > > x86_64-pc-linux-gnu > > > locale: > > [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C > > [3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8 > > [5] LC_MONETARY=C LC_MESSAGES=en_AU.UTF-8 > > [7] LC_PAPER=en_AU.UTF-8 LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > > [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > loaded via a namespace (and not attached): > > [1] tools_2.10.1 > > >> traceback() > > 3: stop(gettextf("no methods for '%s' and no documentation for it as a > > function", > > f), domain = NA) > > 2: .helpForCall(topicExpr, parent.frame()) > > 1: `?`(EBImage()) > > > Regards > > Elsa Chacko > > PhD Student > > Macquarie University. > > > -- > > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > > version of the package, 2) to report the output of sessionInfo() and > > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > > "aroma.affymetrix" group with websitehttp://www.aroma-project.org/. > > To post to this group, send email to aroma-affymetrix@googlegroups.com > > To unsubscribe and other options, go tohttp://www.aroma-project.org/forum/ -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
