Hi Henrik, Sorry, the error is after cbs <- CbsModel(ds); ce <- ChromosomeExplorer(cbs); process(ce, verbose=TRUE);
Generating ChromosomeExplorer report... Loading required package: Cairo <simpleError in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared library 'C:/Users/rmhkyji/R/win64-library/2.11/GLAD/libs/x64/GLAD.dll': LoadLibrary failure: The specified module could not be found. And there is a pop out window saying: The program can't start because libgsl-0.dll I smissing from your computer. Try reinstalling the program to fix this program. Yan -----Original Message----- From: aroma-affymetrix@googlegroups.com [mailto:aroma-affymet...@googlegroups.com] On Behalf Of Henrik Bengtsson Sent: 23 November 2010 18:50 To: aroma-affymetrix Subject: Re: [aroma.affymetrix] libgsl-0.dll missing error Hi. On Tue, Nov 23, 2010 at 10:05 AM, Yan Jiao <y.j...@ucl.ac.uk> wrote: > > > Dear all, > > I'm trying to do DNA segmentation, > > This is what I'm doing: > > ds <- doCRMAv1("Fockens_1", chipType="Mapping50K_Hind240", verbose=TRUE); > > ###this is done sucessfully > > # Segmentation > > cbs <- CbsModel(ds); > > > > I got error libgsl-0.dll is missing, I think it's using GLAD, but I'm trying > to use DNAcopy for segmentation. Is it really the case that you get that error when you do: cbs <- CbsModel(ds); or do you do anything else? Is suspect you do something more. Also, after you got the error, could you cut'n'paste the verbose output including any error messages you get and send it to us? Also, make sure to report what print(traceback()) gives immediate after getting the error. /Henrik PS. The 'GLAD' package may indeed be used regardless of segmentation method because it contains information about cytobands. > > How to change it? > > > > Many thanks > > > > yan > > > > > > > > ********************************************************************** > > This email and any files transmitted with it are confidential and > > intended solely for the use of the individual or entity to whom they > > are addressed. If you have received this email in error please notify > > the system manager (it.supp...@cancer.ucl.ac.uk). > > ********************************************************************** > > > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
