Hi Henrik, I was very confused by the difference between "AromaUnitTotalCnBinarySet" and "CnChipEffectSet". I noticed that the latest CRMAv2 method generates "AromaUnitTotalCnBinarySet", not "CnChipEffectSet" any more. Are they compatible with each other?
Another confusion I have is the difference between "calculateBaseline()" and "getAverageFile()". I am trying to process a set of Hapmap samples and use their pooled average as a general copy number reference. So which function should I use? Thank you very much. Best, Kai -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
