Messages by Date
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Keith Ching
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2012/02/02
Re: [aroma.affymetrix] R crashing with new installation of R-2.14.1 and latest aroma.affymetrix
Keith Ching
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Henrik Bengtsson
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Kai
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Henrik Bengtsson
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Keith Ching
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Henrik Bengtsson
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Keith Ching
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2012/02/02
Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Henrik Bengtsson
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2012/02/02
[aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Maxime Tarabichi
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2012/02/01
Re: [aroma.affymetrix] Installing Aroma Affymetrix Error
Fong
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2012/02/01
Re: [aroma.affymetrix] Installing Aroma Affymetrix Error
Henrik Bengtsson
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2012/02/01
[aroma.affymetrix] Installing Aroma Affymetrix Error
Fong
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2012/02/01
Re: [aroma.affymetrix] doCRMAv2 error
Henrik Bengtsson
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2012/02/01
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Henrik Bengtsson
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2012/02/01
[aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Keith Ching
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2012/02/01
[aroma.affymetrix] doCRMAv2 error
Angelina Chattopadhyay Mukherjee
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2012/01/31
Re: [aroma.affymetrix] Create binary data files containing BAF data
Henrik Bengtsson
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2012/01/31
Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Henrik Bengtsson
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2012/01/30
[aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Maxime Tarabichi
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2012/01/30
Re: [aroma.affymetrix] Create binary data files containing BAF data
Kai
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2012/01/30
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
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2012/01/27
Re: [aroma.affymetrix] Custom Cdf
Henrik Bengtsson
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2012/01/26
[aroma.affymetrix] Custom Cdf
Steve Pederson
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2012/01/25
Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Henrik Bengtsson
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2012/01/25
[aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Maxime Tarabichi
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2012/01/24
Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Henrik Bengtsson
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2012/01/23
[aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Maxime Tarabichi
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2012/01/21
Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Henrik Bengtsson
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2012/01/21
[aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types.
Maxime Tarabichi
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2012/01/20
Re: [aroma.affymetrix] Create binary data files containing BAF data
Henrik Bengtsson
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2012/01/20
Re: [aroma.affymetrix] Exception: Internal error. Reference files of non-matching chip types.
Henrik Bengtsson
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2012/01/19
Re: [aroma.affymetrix] Exception: Internal error. Reference files of non-matching chip types.
Henrik Bengtsson
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2012/01/19
[aroma.affymetrix] Exception: Internal error. Reference files of non-matching chip types.
Maxime Tarabichi
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2012/01/19
Re: [aroma.affymetrix] Create binary data files containing BAF data
Kai
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2012/01/18
Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Henrik Bengtsson
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2012/01/18
RE: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Steven McKinney
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2012/01/18
Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Henrik Bengtsson
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2012/01/18
Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Henrik Bengtsson
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2012/01/17
RE: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Steven McKinney
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2012/01/17
Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Henrik Bengtsson
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2012/01/17
[aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Steven McKinney
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2012/01/15
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
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2012/01/15
Re: [aroma.affymetrix] An error message from running PSCBS
Hoon Kim
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2012/01/15
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
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2012/01/15
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
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2012/01/14
[aroma.affymetrix] OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2
Henrik Bengtsson
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2012/01/14
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
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2012/01/14
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
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2012/01/13
[aroma.affymetrix] R crashing with new installation of R-2.14.1 and latest aroma.affymetrix
Steven McKinney
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2012/01/13
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
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2012/01/12
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
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2012/01/12
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
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2012/01/12
Re: [aroma.affymetrix] -Inf in FIRMA score matrix
Henrik Bengtsson
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2012/01/12
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
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2012/01/12
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
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2012/01/12
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
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2012/01/12
Re: [aroma.affymetrix] Create binary data files containing BAF data
Henrik Bengtsson
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2012/01/12
[aroma.affymetrix] Create binary data files containing BAF data
Kai
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2012/01/12
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
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2012/01/12
Re: [aroma.affymetrix] Error in fit(plm)
Henrik Bengtsson
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2012/01/12
[aroma.affymetrix] Error in fit(plm)
cruckert
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2012/01/12
[aroma.affymetrix] aroma.affymetrix v2.4.0 released
Henrik Bengtsson
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2012/01/11
Re: [aroma.affymetrix] error message while running segmentByPairedPSCBS
Henrik Bengtsson
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2012/01/10
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
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2012/01/09
[aroma.affymetrix] An error message from running PSCBS
wisekh6
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2012/01/09
[aroma.affymetrix] -Inf in FIRMA score matrix
rene.rotterdam
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2012/01/08
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
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2012/01/06
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Henrik Bengtsson
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2012/01/06
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
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2012/01/06
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
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2012/01/06
Re: [aroma.affymetrix] error message while running segmentByPairedPSCBS
Henrik Bengtsson
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2012/01/05
[aroma.affymetrix] error message while running segmentByPairedPSCBS
Minya Pu
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2012/01/05
[aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
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2012/01/05
Re: [aroma.affymetrix] Re: gcRMA for Gene ST Arrays
dbe...@u.washington.edu
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2012/01/04
[aroma.affymetrix] Re: Using aroma with Cytoscan HD array data
D Goode
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2012/01/04
[aroma.affymetrix] Re: HuEx cdf based on current annotation
rene.rotterdam
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2012/01/04
[aroma.affymetrix] Re: HuEx cdf based on current annotation
rene.rotterdam
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2012/01/03
[aroma.affymetrix] Using aroma with Cytoscan HD array data
D Goode
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2011/12/31
Re: [aroma.affymetrix] error when converting CDF
Sean Liang
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2011/12/31
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
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2011/12/31
Re: [aroma.affymetrix] error when converting CDF
Henrik Bengtsson
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2011/12/30
[aroma.affymetrix] error when converting CDF
itshuang
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2011/12/16
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
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2011/12/16
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
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2011/12/15
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
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2011/12/15
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
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2011/12/15
[aroma.affymetrix] error in generationg regions.xls file after gada segmentation
Zelha Nil
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2011/12/15
[aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Zelha Nil
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2011/12/15
RE: [aroma.affymetrix] HuEx cdf based on current annotation
Steve Pederson
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2011/12/14
[aroma.affymetrix] HuEx cdf based on current annotation
rene.rotterdam
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2011/12/13
RE: [aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
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2011/12/13
Re: [aroma.affymetrix] "Rcache file format error" when running "doCRMAv2" with SNP6 copy number data
Henrik Bengtsson
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2011/12/13
Re: [aroma.affymetrix] REMOVE ME
Henrik Bengtsson
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2011/12/13
[aroma.affymetrix] "Rcache file format error" when running "doCRMAv2" with SNP6 copy number data
wisekh6
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2011/12/13
[aroma.affymetrix] REMOVE ME
James F. Reid
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2011/12/12
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
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2011/12/12
Re: [aroma.affymetrix] Re: Clarification of Raw CN estimates and CBS mean
Henrik Bengtsson
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2011/12/12
Re: [aroma.affymetrix] hg18 annotation files for SNP6
Henrik Bengtsson
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2011/12/12
[aroma.affymetrix] Re: Clarification of Raw CN estimates and CBS mean
Greg Wall
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2011/12/12
[aroma.affymetrix] Clarification of Raw CN estimates and CBS mean
Gregory W
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2011/12/09
RE: [aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
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2011/12/08
[aroma.affymetrix] Re: Interpretation of cbsmodel output
Les Ander
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2011/12/08
[aroma.affymetrix] hg18 annotation files for SNP6
wisekh6
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2011/12/08
Re: [aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
Henrik Bengtsson
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2011/12/08
Re: [aroma.affymetrix] Interpretation of cbsmodel output
Henrik Bengtsson
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2011/12/08
Re: [aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
xiaowei guan
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2011/12/08
[aroma.affymetrix] Interpretation of cbsmodel output
Les Ander
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2011/12/06
Re: [aroma.affymetrix] Tumour/Normal copy number analysis with SNP_6 and 500K chips
Henrik Bengtsson
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2011/12/06
[aroma.affymetrix] Tumour/Normal copy number analysis with SNP_6 and 500K chips
Steven McKinney
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2011/12/03
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
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2011/12/02
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
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2011/12/02
RE: [aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
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2011/12/02
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
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2011/12/02
[aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
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2011/12/01
Re: [aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
Henrik Bengtsson
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2011/12/01
RE: [aroma.affymetrix] GenomeWideSNP_6 annotation file acquisition issues
Steven McKinney
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2011/12/01
Re: [aroma.affymetrix] GenomeWideSNP_6 annotation file acquisition issues
Henrik Bengtsson
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2011/12/01
[aroma.affymetrix] GenomeWideSNP_6 annotation file acquisition issues
Steven McKinney
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2011/11/30
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Peiyong
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2011/11/30
[aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
xiaowei guan
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2011/11/30
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
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2011/11/30
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
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2011/11/30
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Peiyong
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2011/11/30
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
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2011/11/30
[aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Peiyong
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2011/11/26
Re: [aroma.affymetrix] Identify outlier density curves by cel file ID, on density plots?
Henrik Bengtsson
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2011/11/25
[aroma.affymetrix] Identify outlier density curves by cel file ID, on density plots?
evansa
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2011/11/21
Re: [aroma.affymetrix] Re: XML error Retrieving SNP information annotations
Henrik Bengtsson
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2011/11/21
[aroma.affymetrix] Re: XML error Retrieving SNP information annotations
GermanL
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2011/11/17
Re: [aroma.affymetrix] FIRMA on subset of normalized samples
Henrik Bengtsson
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2011/11/17
Re: [aroma.affymetrix] FIRMA Scores in unit, group and cell columns for HuEx-1.0
Henrik Bengtsson
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2011/11/17
Re: [aroma.affymetrix] Regarding mergeGroups=FALSE / TRUE option in ExonRmaPlm()
Henrik Bengtsson
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2011/11/17
Re: [aroma.affymetrix] Re: hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
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2011/11/17
Re: [aroma.affymetrix] Re: Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Henrik Bengtsson
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2011/11/17
[aroma.affymetrix] Re: hg18 or hg19 used in ChromosomeExplorer
Kai
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2011/11/17
[aroma.affymetrix] Re: Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Kai
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2011/11/17
[aroma.affymetrix] Re: TumorBoost and LOH
sigrid
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2011/11/16
Re: [aroma.affymetrix] TumorBoost and LOH
Henrik Bengtsson
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2011/11/16
[aroma.affymetrix] TumorBoost and LOH
sigrid
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2011/11/16
[aroma.affymetrix] Processing multiple Affymetrix arrays
Pierre Neuvial
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2011/11/16
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
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2011/11/16
Re: [aroma.affymetrix] Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Henrik Bengtsson
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2011/11/16
[aroma.affymetrix] Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Kai
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2011/11/16
[aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
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2011/11/15
Re: [aroma.affymetrix] parallele computing for segmentation step using all the CPUs
Henrik Bengtsson
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2011/11/15
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
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2011/11/15
Re: [aroma.affymetrix] Paired CBS
Michelle
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2011/11/15
[aroma.affymetrix] parallele computing for segmentation step using all the CPUs
Qian
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2011/11/15
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
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2011/11/15
Re: [aroma.affymetrix] Paired CBS
Michelle
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2011/11/14
Re: [aroma.affymetrix] error in generating segmentation PNG file
Henrik Bengtsson
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2011/11/14
Re: [aroma.affymetrix] Re: XML error Retrieving SNP information annotations
Henrik Bengtsson
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2011/11/14
Re: [aroma.affymetrix] error in generating segmentation PNG file
Henrik Bengtsson
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2011/11/14
[aroma.affymetrix] error in generating segmentation PNG file
Qian
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2011/11/14
[aroma.affymetrix] Re: XML error Retrieving SNP information annotations
GermanL
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2011/11/11
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
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2011/11/11
[aroma.affymetrix] Re: accessing chip effect sets
wisekh6
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2011/11/11
[aroma.affymetrix] Paired CBS
Michelle
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2011/11/11
Re: [aroma.affymetrix] Re: accessing chip effect sets
Henrik Bengtsson
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2011/11/11
[aroma.affymetrix] Re: accessing chip effect sets
wisekh6
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2011/11/11
Re: [aroma.affymetrix] Re: XML error Retrieving SNP information annotations
Henrik Bengtsson
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2011/11/11
Re: [aroma.affymetrix] accessing chip effect sets
Pierre Neuvial
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2011/11/11
[aroma.affymetrix] Re: XML error Retrieving SNP information annotations
GermanL
-
2011/11/10
[aroma.affymetrix] accessing chip effect sets
wisekh6
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2011/11/10
[aroma.affymetrix] Re: GladModel() error
Ivan Smirnov
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2011/11/10
Re: [aroma.affymetrix] XML error Retrieving SNP information annotations
Henrik Bengtsson
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2011/11/10
[aroma.affymetrix] XML error Retrieving SNP information annotations
GermanL
-
2011/11/09
Re: [aroma.affymetrix] GladModel() error
Henrik Bengtsson
-
2011/11/09
[aroma.affymetrix] question about generate GAIN/LOSS call after cbs segmentation
Qian Liu
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2011/11/09
[aroma.affymetrix] NAs in FIRMA result matrix
rene.rotterdam
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2011/11/09
[aroma.affymetrix] GladModel() error
Qian Liu
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2011/11/08
[aroma.affymetrix] Estimating tumor purity from affymetrix snp6.0 copy nrs
wisekh6
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2011/11/08
Re: [aroma.affymetrix] Re: ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Henrik Bengtsson
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2011/11/08
[aroma.affymetrix] Re: ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Qian
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2011/11/08
Re: [aroma.affymetrix] ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Henrik Bengtsson
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2011/11/08
[aroma.affymetrix] ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Qian
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2011/11/08
[aroma.affymetrix] Re: CNA frequency plot
Ivan Smirnov
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2011/11/07
Re: [aroma.affymetrix] core dump error after upgrading R
Henrik Bengtsson
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2011/11/07
Re: [aroma.affymetrix] core dump error after upgrading R
Peter Kang
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2011/11/07
Re: [aroma.affymetrix] Re: CNA frequency plot
Henrik Bengtsson
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2011/11/07
[aroma.affymetrix] Re: CNA frequency plot
Ivan Smirnov
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2011/11/07
Re: [aroma.affymetrix] core dump error after upgrading R
Henrik Bengtsson
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2011/11/07
Re: [aroma.affymetrix] core dump error after upgrading R
Peter Kang
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2011/11/07
Re: [aroma.affymetrix] core dump error after upgrading R
Henrik Bengtsson
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2011/11/07
Re: [aroma.affymetrix] core dump error after upgrading R
Pierre Neuvial
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2011/11/07
[aroma.affymetrix] core dump error after upgrading R
Peter Kang
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2011/11/05
Re: [aroma.affymetrix] CRLMM algorithm
Henrik Bengtsson
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2011/11/05
Re: [aroma.affymetrix] doCRMAv2 then what?
Henrik Bengtsson
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2011/11/05
Re: [aroma.affymetrix] CRLMM algorithm
Henrik Bengtsson
-
2011/11/05
[aroma.affymetrix] doCRMAv2 then what?
Les Ander
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2011/11/05
[aroma.affymetrix] CRLMM algorithm
Peter Kang
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2011/11/03
[aroma.affymetrix] Re: Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Ivan Smirnov
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2011/11/03
RE: [aroma.affymetrix] CRMA v2 step 3 probe summarization
qian.liu
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2011/11/03
[aroma.affymetrix] aroma.affymetrix v2.3.0 released
Henrik Bengtsson
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2011/11/03
Re: [aroma.affymetrix] CRMA v2 step 3 probe summarization
Henrik Bengtsson
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2011/11/03
[aroma.affymetrix] CRMA v2 step 3 probe summarization
qian.liu
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2011/11/01
Re: [aroma.affymetrix] Re: Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Henrik Bengtsson
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2011/11/01
[aroma.affymetrix] Re: Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Ivan Smirnov
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2011/10/31
Re: [aroma.affymetrix] Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Henrik Bengtsson