Hi everyone, I recently tried the CalMate add-on to improve the copy number and allelic frequency estimates, and it really does bring a nice improvement, especially on the allelic frequency (the different levels of allelic frequency are clearly more distinguishable). However, I searched the aroma-project website but could find no documentation on the algorithm by itself, only a reference to a non-submitted paper in the addons page (CalMaTe - A calibration method to improve allele- specific copy number estimates from SNP microarrays, 2010 (to be submitted) ). Is it possible to have technical details on the CalMaTe calibration method ?
Thank you in advance, Jonas Mandel -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
