Hi,
As you may have noticed, this will also happens when you try to load
GLAD by itself in a fresh R session:
> require("GLAD")
Loading required package: GLAD
Error in inDL(x, as.logical(local), as.logical(now), ...) :
unable to load shared object
'C:/ProgramFiless/R-2.14.0/library/GLAD/libs/i386/GLAD.dll':
LoadLibrary failure: The specified module could not be found.
That is, it is a problem independent of the Aroma framework. When
GLAD loads correctly and one of its own examples works, then GladModel
of Aroma will work too. Please contact the author and/or Bioc
mailing list for help on this issue. See also:
http://bioconductor.org/packages/2.9/bioc/html/GLAD.html
/Henrik
On Wed, Nov 9, 2011 at 7:44 AM, Qian Liu <littleduc...@gmail.com> wrote:
> Dear all,
> I am trying to use GLAD to do segmentation. So far I have tried CBS model
> and figures were generated.
> When I try GladModel(), I got error message in a pop-up window
> "System Error: The program can't start because libgsl-0.dll is missing from
> your computer. Try reinstalling the program to fix this problem."
> I searched old post and one of them said GLAD is not installed. So I
> reinstall the package. it has error message again. What should I do to make
> GladModel() work?
>
> Thanks,
> Qian
>
>
>> biocLite("GLAD")
> BioC_mirror: 'http://www.bioconductor.org'
> Using R version 2.14, BiocInstaller version 1.2.0.
> Installing package(s) 'GLAD'
> trying URL
> 'http://www.bioconductor.org/packages/2.9/bioc/bin/windows/contrib/2.14/GLAD_2.16.0.zip'
> Content type 'application/zip' length 1836234 bytes (1.8 Mb)
> opened URL
> downloaded 1.8 Mb
> package ‘GLAD’ successfully unpacked and MD5 sums checked
> The downloaded packages are in
> C:\Users\qianliu\AppData\Local\Temp\RtmpS8pp9E\downloaded_packages
>> require("GLAD")
> Loading required package: GLAD
> Error in inDL(x, as.logical(local), as.logical(now), ...) :
> unable to load shared object
> 'C:/ProgramFiless/R-2.14.0/library/GLAD/libs/i386/GLAD.dll':
> LoadLibrary failure: The specified module could not be found.
>
> #GLAD Model
> sm_ref_GLAD<- GladModel(cesNList[[1]],ceR)
> fit(sm_ref_GLAD, verbose=-10);
>> sessionInfo()
> R version 2.14.0 (2011-10-31)
> Platform: i386-pc-mingw32/i386 (32-bit)
> locale:
> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> States.1252
> [3] LC_MONETARY=English_United States.1252
> LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
> other attached packages:
> [1] aroma.affymetrix_2.3.0 affxparser_1.26.1 aroma.apd_0.2.0
> R.huge_0.3.0
> [5] aroma.core_2.3.0 aroma.light_1.22.0 matrixStats_0.3.0
> R.rsp_0.6.7
> [9] R.cache_0.5.2 R.filesets_1.1.3 digest_0.5.1
> R.utils_1.9.3
> [13] R.oo_1.8.3 R.methodsS3_1.2.1 BiocInstaller_1.2.0
> loaded via a namespace (and not attached):
> [1] tools_2.14.0
>
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
> You received this message because you are subscribed to the Google Groups
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> To post to this group, send email to aroma-affymetrix@googlegroups.com
> To unsubscribe and other options, go to http://www.aroma-project.org/forum/
>
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
