Messages by Date
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2012/09/14
Re: [aroma.affymetrix] How to apply TumorBoost to Illumina data?
Henrik Bengtsson
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2012/09/14
Re: [aroma.affymetrix] How to apply TumorBoost to Illumina data?
Reed
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2012/09/13
Re: [aroma.affymetrix] How to apply TumorBoost to Illumina data?
Henrik Bengtsson
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2012/09/13
Re: [aroma.affymetrix] How to apply TumorBoost to Illumina data?
Reed
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2012/09/12
Re: [aroma.affymetrix] No CDF file for chip type found: HuEx-1_0-st-v2"
Henrik Bengtsson
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2012/09/12
Re: [aroma.affymetrix] How to apply TumorBoost to Illumina data?
Henrik Bengtsson
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2012/09/12
[aroma.affymetrix] No CDF file for chip type found: HuEx-1_0-st-v2"
Maria Rodrigo
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2012/09/10
[aroma.affymetrix] How to apply TumorBoost to Illumina data?
Unyanee Poolsap
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2012/09/06
[aroma.affymetrix] aroma.affymetrix v2.6.0 released
Henrik Bengtsson
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2012/09/06
Re: [aroma.affymetrix] Re: Installation problems R.methodsS3
Henrik Bengtsson
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2012/09/06
Re: [aroma.affymetrix] Re: Installation problems R.methodsS3
Mike
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2012/09/06
Re: [aroma.affymetrix] Re: Installation problems R.methodsS3
Mike
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2012/09/06
Re: [aroma.affymetrix] Re: Installation problems R.methodsS3
Henrik Bengtsson
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2012/09/06
[aroma.affymetrix] Re: Installation problems R.methodsS3
Mike
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2012/09/06
[aroma.affymetrix] Installation problems R.methodsS3
Mike
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2012/09/03
Re: [aroma.affymetrix] CRMAv2 hangs during "process" function
CanadianJK
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2012/08/30
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Henrik Bengtsson
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2012/08/30
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Maria Rodrigo
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2012/08/29
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Henrik Bengtsson
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2012/08/29
Re: [aroma.affymetrix] Aroma Affymetrix (v 2.5.0) installation dependencies
Henrik Bengtsson
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2012/08/29
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Henrik Bengtsson
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2012/08/29
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Maria Rodrigo
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2012/08/28
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Henrik Bengtsson
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2012/08/28
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Maria Rodrigo
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2012/08/26
Re: [aroma.affymetrix] Vignette: Total copy number analysis using CRMA v1
Henrik Bengtsson
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2012/08/26
Re: [aroma.affymetrix] Aroma Affymetrix (v 2.5.0) installation dependencies
Henrik Bengtsson
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2012/08/26
Re: [aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Henrik Bengtsson
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2012/08/26
Re: [aroma.affymetrix] CRMAv2 hangs during "process" function
Henrik Bengtsson
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2012/08/26
Re: [aroma.affymetrix] Modifying the Plots of plotNuse() and plotRle()
Henrik Bengtsson
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2012/08/21
[aroma.affymetrix] CRMAv2 hangs during "process" function
CanadianJK
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2012/08/20
[aroma.affymetrix] Invitation to use Google Talk
Google Talk
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2012/08/20
[aroma.affymetrix] Invitation to use Google Talk
Google Talk
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2012/08/15
[aroma.affymetrix] Wrong number of cells on custom .CDF file for exon array
Maria Rodrigo-Domingo
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2012/08/13
Re: [aroma.affymetrix] Aroma Affymetrix (v 2.5.0) installation dependencies
Jay
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2012/08/01
[aroma.affymetrix] Modifying the Plots of plotNuse() and plotRle()
Fong
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2012/07/26
[aroma.affymetrix] Paired processing of data from different Affy platforms
Steven McKinney
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2012/07/24
Re: [aroma.affymetrix] extractSignals for tumorboost
Henrik Bengtsson
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2012/07/23
Re: [aroma.affymetrix] CRMAv2, Error in `rownames<-`(`*tmp*`, value = c("A", "B")) :
complexkid
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2012/07/23
[aroma.affymetrix] extractSignals for tumorboost
complexkid
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2012/07/15
[aroma.affymetrix] Vignette: Total copy number analysis using CRMA v1
Ekaterina
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2012/07/11
Re: [aroma.affymetrix] CRMAv2, Error in `rownames<-`(`*tmp*`, value = c("A", "B")) :
Henrik Bengtsson
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2012/07/11
Re: [aroma.affymetrix] Crash following AffymetrixCdfFile
Henrik Bengtsson
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2012/07/11
[aroma.affymetrix] Crash following AffymetrixCdfFile
Nir
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2012/07/07
[aroma.affymetrix] Getting Probe IDs in the unitName column
Heather Wick
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2012/07/06
[aroma.affymetrix] CRMAv2, Error in `rownames<-`(`*tmp*`, value = c("A", "B")) :
complexkid
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2012/07/03
[aroma.affymetrix] Tumor Boost for all chromosomes
NT_CMU
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2012/07/02
Re: [aroma.affymetrix] process(ae) and display(ae) error
Henrik Bengtsson
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2012/07/01
Re: [aroma.affymetrix] annotation files for CytoScan750K_array
Henrik Bengtsson
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2012/06/30
[aroma.affymetrix] annotation files for CytoScan750K_array
joshy
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2012/06/28
[aroma.affymetrix] Re: TumorBoost - Normalization of allelic-specific copy numbers in tumors with matched normals
NT_CMU
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2012/06/27
[aroma.affymetrix] Re: Error in "getGenomeInformation"
Andrew
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2012/06/27
Re: [aroma.affymetrix] Re: Error in "getGenomeInformation"
Henrik Bengtsson
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2012/06/27
Re: [aroma.affymetrix] Re: Error in "getGenomeInformation"
Andrew
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2012/06/27
[aroma.affymetrix] process(ae) and display(ae) error
mangoC
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2012/06/26
Re: [aroma.affymetrix] Re: Error in "getGenomeInformation"
Henrik Bengtsson
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2012/06/26
[aroma.affymetrix] Re: Error in "getGenomeInformation"
Andrew
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2012/06/25
[aroma.affymetrix] Re: TumorBoost - Normalization of allelic-specific copy numbers in tumors with matched normals
NT_CMU
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2012/06/25
Re: [aroma.affymetrix] TumorBoost - Normalization of allelic-specific copy numbers in tumors with matched normals
Henrik Bengtsson
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2012/06/21
Re: [aroma.affymetrix] Dm_tiling2_MR_v01.bpmap to Dm_tiling2_MR_v01.cdf conversion
Henrik Bengtsson
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2012/06/21
[aroma.affymetrix] Dm_tiling2_MR_v01.bpmap to Dm_tiling2_MR_v01.cdf conversion
hanat T
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2012/06/20
[aroma.affymetrix] adjustment for background noise on human exon array
rene.rotterdam
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2012/06/19
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
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2012/06/19
Re: [aroma.affymetrix] Paired CBS
Michelle
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2012/06/19
Re: [aroma.affymetrix] Re: Error in "getGenomeInformation"
Henrik Bengtsson
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2012/06/19
Re: [aroma.affymetrix] Re: Problem with AffymetrixCelSet cmd
NT_CMU
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2012/06/19
[aroma.affymetrix] Re: Error in "getGenomeInformation"
NT_CMU
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2012/06/18
Re: [aroma.affymetrix] Error in "getGenomeInformation"
Henrik Bengtsson
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2012/06/18
Re: [aroma.affymetrix] Error in "getGenomeInformation"
Pierre Neuvial
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2012/06/18
Re: [aroma.affymetrix] Re: Problem with AffymetrixCelSet cmd
Henrik Bengtsson
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2012/06/18
[aroma.affymetrix] Re: Problem with AffymetrixCelSet cmd
NT_CMU
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2012/06/18
[aroma.affymetrix] Error in "getGenomeInformation"
NT_CMU
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2012/06/18
Re: [aroma.affymetrix] Problem with AffymetrixCelSet cmd
NT_CMU
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2012/06/18
Re: [aroma.affymetrix] Problem with AffymetrixCelSet cmd
Pierre Neuvial
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2012/06/18
[aroma.affymetrix] Problem with AffymetrixCelSet cmd
NT_CMU
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2012/06/15
Re: [aroma.affymetrix] analysis of HuGene-1_1-st-v1
Henrik Bengtsson
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2012/06/15
Re: [aroma.affymetrix] out of memory??
Henrik Bengtsson
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2012/06/15
Re: [aroma.affymetrix] SNP data from some chip information files
Henrik Bengtsson
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2012/06/15
Re: [aroma.affymetrix] out of memory??
MH
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2012/06/15
Re: [aroma.affymetrix] out of memory??
MH
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2012/06/15
[aroma.affymetrix] SNP data from some chip information files
Tommaso Mazza
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2012/06/14
Re: [aroma.affymetrix] out of memory??
Henrik Bengtsson
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2012/06/14
Re: [aroma.affymetrix] out of memory??
MH
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2012/06/14
Re: [aroma.affymetrix] out of memory??
MH
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2012/06/14
Re: [aroma.affymetrix] out of memory??
Henrik Bengtsson
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2012/06/14
[aroma.affymetrix] out of memory??
MH
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2012/06/13
Re: [aroma.affymetrix] analysis of HuGene-1_1-st-v1
Henrik Bengtsson
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2012/06/12
Re: [aroma.affymetrix] How to retrieve probe level intensity from csN for U133 plus2 expression array?
sean nj
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2012/06/12
[aroma.affymetrix] analysis of HuGene-1_1-st-v1
dave
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2012/06/11
Re: [aroma.affymetrix] How to retrieve probe level intensity from csN for U133 plus2 expression array?
Henrik Bengtsson
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2012/06/11
[aroma.affymetrix] How to retrieve probe level intensity from csN for U133 plus2 expression array?
sean nj
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2012/06/06
Re: [aroma.affymetrix] custom Exon array - chipType at FIRMA
Henrik Bengtsson
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2012/06/06
[aroma.affymetrix] custom Exon array - chipType at FIRMA
Hyuna Yang
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2012/05/30
Re: [aroma.affymetrix] Re: error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
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2012/05/29
Re: [aroma.affymetrix] Generating common variance from tumour/normal pair ratios
Henrik Bengtsson
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2012/05/29
Re: [aroma.affymetrix] Tumor vs drug-treated-tumor
Henrik Bengtsson
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2012/05/29
[aroma.affymetrix] Re: CBS output
Henrik Bengtsson
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2012/05/29
Re: Poor quality PNG output (Was: Re: [aroma.affymetrix] Paired CBS)
Henrik Bengtsson
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2012/05/29
Re: [aroma.affymetrix] CBS only on CN data instead of using both CN and SNP data
Henrik Bengtsson
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2012/05/29
Re: [aroma.affymetrix] Exception Error when computing non-paired CBS: Exception: .. Too many non-finite values ......
Henrik Bengtsson
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2012/05/29
Re: [aroma.affymetrix] Aroma Affymetrix (v 2.5.0) installation dependencies
Henrik Bengtsson
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2012/05/26
[aroma.affymetrix] CBS only on CN data instead of using both CN and SNP data
yu song
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2012/05/25
Re: [aroma.affymetrix] Wrong start/stop positions in Regions.xls - SNP6
Henrik Bengtsson
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2012/05/25
Re: [aroma.affymetrix] Re: UCSC links in the regions.xls file pointing to wrong genome build?
Henrik Bengtsson
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2012/05/23
[aroma.affymetrix] Re: UCSC links in the regions.xls file pointing to wrong genome build?
Cristian Bassi
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2012/05/22
[aroma.affymetrix] Wrong start/stop positions in Regions.xls - SNP6
Cristian Bassi
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2012/05/18
[aroma.affymetrix] Exception Error when computing non-paired CBS: Exception: .. Too many non-finite values ......
sean nj
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2012/05/17
Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A)
sean nj
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2012/05/17
Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A)
sean nj
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2012/05/16
Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A)
sean nj
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2012/05/16
Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A)
Pierre Neuvial
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2012/05/16
Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A)
sean nj
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2012/05/15
[aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A)
sean nj
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2012/05/08
Re: [aroma.affymetrix] Paired CBS
Yu Song
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2012/05/08
Re: [aroma.affymetrix] Paired CBS
Michelle
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2012/05/08
[aroma.affymetrix] Aroma Affymetrix (v 2.5.0) installation dependencies
Jay
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2012/05/08
Re: [aroma.affymetrix] [aroma.aff​ymetrix] Error when converting CustomCDF to binary format!
Pierre Neuvial
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2012/05/08
Re: [aroma.affymetrix] Paired CBS
Pierre Neuvial
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2012/05/07
Re: [aroma.affymetrix] Paired CBS
Michelle
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2012/05/07
[aroma.affymetrix] [aroma.aff​ymetrix] Error when converting CustomCDF to binary format!
sean nj
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2012/05/07
Re: [aroma.affymetrix] UCSC links in the regions.xls file pointing to wrong genome build?
Marcin Krzystanek
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2012/05/07
[aroma.affymetrix] UCSC links in the regions.xls file pointing to wrong genome build?
Sebastian Burgstaller
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2012/05/05
[aroma.affymetrix] Generating common variance from tumour/normal pair ratios
Sathish Periyasamy
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2012/04/30
[aroma.affymetrix] Tumor vs drug-treated-tumor
Marcin
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2012/04/18
Re: [aroma.affymetrix] Error in Paired PSCBS with CytoScanHD
Pierre Neuvial
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2012/04/18
[aroma.affymetrix] Error in Paired PSCBS with CytoScanHD
Sathish Periyasamy
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2012/04/16
Re: [aroma.affymetrix] object 'cns' not found
Henrik Bengtsson
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2012/04/16
Re: [aroma.affymetrix] object 'cns' not found
Pierre Neuvial
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2012/04/16
[aroma.affymetrix] Failed to split tumor and normal samples
Andyusa
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2012/04/16
[aroma.affymetrix] object 'cns' not found
Andyusa
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2012/04/11
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Mike
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2012/04/10
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Henrik Bengtsson
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2012/04/10
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Mike
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2012/04/10
[aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed
Frederic Foucault
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2012/04/05
Re: [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed
Henrik Bengtsson
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2012/04/05
Re: [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed
Henrik Bengtsson
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2012/04/05
[aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed
Frederic Foucault
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2012/04/05
Re: [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed
Pierre Neuvial
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2012/04/05
[aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed
Frederic Foucault
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2012/04/04
Re: [aroma.affymetrix] ACNE getGenomeInformation(cdf) failed
Henrik Bengtsson
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2012/04/04
[aroma.affymetrix] ACNE getGenomeInformation(cdf) failed
Fred Foucault
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2012/03/30
[aroma.affymetrix] Aroma still crashing on mac 10.7 (lion)
Jorge Melendez
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2012/03/30
[aroma.affymetrix] Re: OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2
Jorge Melendez
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2012/03/28
Re: [aroma.affymetrix] Inbreds and inferring gender
Irsan Kooi
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2012/03/28
Re: [aroma.affymetrix] Inbreds and inferring gender
Irsan Kooi
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2012/03/27
Re: [aroma.affymetrix] Inbreds and inferring gender
Henrik Bengtsson
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2012/03/27
Re: [aroma.affymetrix] Using Different SNP6 Annotations
Fong
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2012/03/27
Re: [aroma.affymetrix] Error in mac to install updated one
Henrik Bengtsson
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2012/03/27
Re: [aroma.affymetrix] Using Different SNP6 Annotations
Henrik Bengtsson
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2012/03/27
[aroma.affymetrix] aroma.affymetrix v2.5.0 released
Henrik Bengtsson
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2012/03/19
[aroma.affymetrix] Using Different SNP6 Annotations
Fong
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2012/03/15
[aroma.affymetrix] Inbreds and inferring gender
Irsan Kooi
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2012/03/15
[aroma.affymetrix] Re: Naive Genotyping in Mouse
Irsan Kooi
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2012/03/10
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Laurent Malvert
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2012/03/09
[aroma.affymetrix] Re: read CEL file
Henrik Bengtsson
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2012/03/09
Re: [aroma.affymetrix] Re: List of AromaUnitTotalCnBinaryFile
Henrik Bengtsson
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2012/03/09
[aroma.affymetrix] Re: List of AromaUnitTotalCnBinaryFile
Gregory W
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2012/03/09
[aroma.affymetrix] List of AromaUnitTotalCnBinaryFile
Gregory W
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2012/03/09
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Henrik Bengtsson
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2012/03/09
[aroma.affymetrix] Re: read CEL file
Henrik Bengtsson
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2012/03/08
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Laurent Malvert
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2012/03/07
[aroma.affymetrix] Affine Normalisation
Dario Strbenac
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2012/03/07
[aroma.affymetrix] SNPFileCreator for SNP 6.0
nai...@hotmail.com
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2012/03/06
[aroma.affymetrix] HapMap and CCLE 5 nearest neighbors
nai...@hotmail.com
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2012/03/05
[aroma.affymetrix] Re: read CEL file
Henrik Bengtsson
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2012/03/05
Re: [aroma.affymetrix] getChipEffectSet: entire transcript or exon by exon
Henrik Bengtsson
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2012/03/05
[aroma.affymetrix] Re: read CEL file
Henrik Bengtsson
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2012/03/02
[aroma.affymetrix] Re: read CEL file
Henrik Bengtsson
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2012/03/02
[aroma.affymetrix] getChipEffectSet: entire transcript or exon by exon
hiberbear
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2012/03/01
[aroma.affymetrix] Re: Reading in 5000 Celfiles using aroma.
Saif UrRehman
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2012/02/28
Re: [aroma.affymetrix] Reading in 5000 Celfiles using aroma.
Henrik Bengtsson
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2012/02/28
[aroma.affymetrix] Reading in 5000 Celfiles using aroma.
Saif UrRehman
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2012/02/17
Re: [aroma.affymetrix] Crash in fit(plm)
Jean-Paul Abbuehl
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2012/02/17
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
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2012/02/17
Re: [aroma.affymetrix] Paired CBS
Michelle
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2012/02/14
RE: [aroma.affymetrix] doCRMAv2 error
Angelina Chattopadhyay Mukherjee
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2012/02/13
Re: [aroma.affymetrix] doCRMAv2 error
Henrik Bengtsson
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2012/02/13
[aroma.affymetrix] Re: Documentation of methods
Irsan Kooi
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2012/02/13
RE: [aroma.affymetrix] doCRMAv2 error
Angelina Chattopadhyay Mukherjee
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2012/02/12
Re: [aroma.affymetrix] Re: mutations
Henrik Bengtsson
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2012/02/12
[aroma.affymetrix] Re: mutations
sigrid
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2012/02/12
Re: [aroma.affymetrix] mutations
Henrik Bengtsson
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2012/02/12
[aroma.affymetrix] mutations
sigrid
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2012/02/11
Re: [aroma.affymetrix] Raw data "HapMap270,6.0,CEU,testSet." used in CRMA v2 method
yu s
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2012/02/11
Re: [aroma.affymetrix] Raw data "HapMap270,6.0,CEU,testSet." used in CRMA v2 method
Henrik Bengtsson
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2012/02/11
[aroma.affymetrix] Raw data "HapMap270,6.0,CEU,testSet." used in CRMA v2 method
yu s
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2012/02/10
Re: [aroma.affymetrix] Crash in fit(plm)
Henrik Bengtsson
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2012/02/10
Re: [aroma.affymetrix] Documentation of methods
Henrik Bengtsson
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2012/02/10
Re: [aroma.affymetrix] doCRMAv2 error
Henrik Bengtsson
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2012/02/10
RE: [aroma.affymetrix] doCRMAv2 error
Angelina Chattopadhyay Mukherjee
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2012/02/10
[aroma.affymetrix] Documentation of methods
Irsan Kooi
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2012/02/10
[aroma.affymetrix] Crash in fit(plm)
Jean-Paul Abbuehl
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2012/02/10
[aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2
Irsan Kooi
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2012/02/09
[aroma.affymetrix] Re: error in creating regions.xsl file after gada segmentation
Roger
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2012/02/03
Re: [aroma.affymetrix] Re: Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Henrik Bengtsson
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2012/02/03
[aroma.affymetrix] Re: Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Keith Ching
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2012/02/03
RE: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Steven McKinney
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2012/02/03
[aroma.affymetrix] Re: Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Kai
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Kai
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2012/02/02
RE: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Steven McKinney
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2012/02/02
Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5
Kai